Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10719 | 3' | -54 | NC_002794.1 | + | 156205 | 0.67 | 0.961678 |
Target: 5'- gCCGGUcggagggCCGGcgACuccGCCGGCGGcUCCg -3' miRNA: 3'- aGGUCAa------GGCC--UGu--CGGUUGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 184903 | 0.68 | 0.95038 |
Target: 5'- cCCGGgcacucgCgCGGgaacaucgGCAGCCGGCGGUcgUCCu -3' miRNA: 3'- aGGUCaa-----G-GCC--------UGUCGGUUGCCA--AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 53295 | 0.67 | 0.954367 |
Target: 5'- cUCCAGgugCCGaGCGGUCGGcCGGcgCCg -3' miRNA: 3'- -AGGUCaa-GGCcUGUCGGUU-GCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 66008 | 0.67 | 0.954367 |
Target: 5'- cCCGGcaCCGaGGCGGCCG-CGGUcgucgCCg -3' miRNA: 3'- aGGUCaaGGC-CUGUCGGUuGCCAa----GG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 64830 | 0.68 | 0.946167 |
Target: 5'- gCCGGcgccgacgaCCGGACGGCgCGGCGGcaCCu -3' miRNA: 3'- aGGUCaa-------GGCCUGUCG-GUUGCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 145075 | 0.68 | 0.95038 |
Target: 5'- -gCGGggCCGGACAGCaCGguguugaaccggACGG-UCCu -3' miRNA: 3'- agGUCaaGGCCUGUCG-GU------------UGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 78213 | 0.68 | 0.943529 |
Target: 5'- -aCGGUccUCCGGGCcgagaggcucucucuAGCCAgACGGcUCCa -3' miRNA: 3'- agGUCA--AGGCCUG---------------UCGGU-UGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 23283 | 0.68 | 0.941268 |
Target: 5'- gUCCaAGUUCUGGACgauauucacacagAGCCAccCGGgUCCc -3' miRNA: 3'- -AGG-UCAAGGCCUG-------------UCGGUu-GCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 67777 | 0.68 | 0.941725 |
Target: 5'- gCCAGc-UCGGACucGGCCGGCGaUUCCu -3' miRNA: 3'- aGGUCaaGGCCUG--UCGGUUGCcAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 53034 | 0.68 | 0.95038 |
Target: 5'- cUCCAGgUCCGuGguGCCG-CGGcUCCa -3' miRNA: 3'- -AGGUCaAGGCcUguCGGUuGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 107516 | 0.67 | 0.954367 |
Target: 5'- gCCGGUcgacgCC-GACGGCCGgcGCGGcgCCg -3' miRNA: 3'- aGGUCAa----GGcCUGUCGGU--UGCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 191517 | 0.67 | 0.961678 |
Target: 5'- gCCAGcgCCGGGCgucGGCCcGCGccUCCc -3' miRNA: 3'- aGGUCaaGGCCUG---UCGGuUGCcaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 83030 | 0.67 | 0.961678 |
Target: 5'- cCCGGcgCCGGGCGGCacccaCGGCGGa--- -3' miRNA: 3'- aGGUCaaGGCCUGUCG-----GUUGCCaagg -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 86991 | 0.67 | 0.958131 |
Target: 5'- gUCCGGcggcUUUCGG-CGG-CGugGGUUCCg -3' miRNA: 3'- -AGGUC----AAGGCCuGUCgGUugCCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 142036 | 0.67 | 0.958131 |
Target: 5'- gCCuGUcgCgGGACcguaCCGGCGGUUCCg -3' miRNA: 3'- aGGuCAa-GgCCUGuc--GGUUGCCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 61819 | 0.67 | 0.958131 |
Target: 5'- cUCCGGcggccgCCGG-CGGCCGGCGucacUCCg -3' miRNA: 3'- -AGGUCaa----GGCCuGUCGGUUGCca--AGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 153123 | 0.67 | 0.954367 |
Target: 5'- uUCgGGUUCgGuGGCGG-CAGCGGgUCCg -3' miRNA: 3'- -AGgUCAAGgC-CUGUCgGUUGCCaAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 112227 | 0.67 | 0.956652 |
Target: 5'- cUCCAGggcgUCCaGGGCcgccgcgaacgccGCCGGCGGgaCCg -3' miRNA: 3'- -AGGUCa---AGG-CCUGu------------CGGUUGCCaaGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 48810 | 0.67 | 0.958131 |
Target: 5'- gUCCA--UCCGGAuCAGCCAGacGUUUCg -3' miRNA: 3'- -AGGUcaAGGCCU-GUCGGUUgcCAAGG- -5' |
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10719 | 3' | -54 | NC_002794.1 | + | 72264 | 0.66 | 0.980828 |
Target: 5'- cCCAGUUCCgcgcGGAagaAGCCGcgaaaGCGGgcgaucgcgUCCc -3' miRNA: 3'- aGGUCAAGG----CCUg--UCGGU-----UGCCa--------AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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