miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 81584 0.66 0.993394
Target:  5'- aCGAAGAagaagacggacCCGCggcCGGAGUCgCGGAc -3'
miRNA:   3'- cGCUUCU-----------GGCGauuGCCUCAG-GCUUu -5'
10719 5' -52.2 NC_002794.1 + 1824 0.66 0.993394
Target:  5'- cCGucGGCCuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCuuCUGGcgauUGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 140019 0.66 0.993394
Target:  5'- cGCGGAGGCCGCggcccccGCGGGcggCgGGAGa -3'
miRNA:   3'- -CGCUUCUGGCGau-----UGCCUca-GgCUUU- -5'
10719 5' -52.2 NC_002794.1 + 124013 0.66 0.992409
Target:  5'- aGCGGGcGGCCGCggaagaGACGGuggccgucuGUCUGAAGa -3'
miRNA:   3'- -CGCUU-CUGGCGa-----UUGCCu--------CAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 80007 0.66 0.992409
Target:  5'- aCGAGGACgGCgacgaGGAGgCCGggGa -3'
miRNA:   3'- cGCUUCUGgCGauug-CCUCaGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 137526 0.66 0.992409
Target:  5'- cGUGGAuGACCGa-GACGGAGUCUu--- -3'
miRNA:   3'- -CGCUU-CUGGCgaUUGCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 176849 0.66 0.992304
Target:  5'- aGCGAGGuCgGUUAgaucaguACGGAGUgCGAGc -3'
miRNA:   3'- -CGCUUCuGgCGAU-------UGCCUCAgGCUUu -5'
10719 5' -52.2 NC_002794.1 + 82573 0.66 0.991983
Target:  5'- gGCGAGGccgacGCCGCcgaGACGGAGacccucuccgcggCCGAAGu -3'
miRNA:   3'- -CGCUUC-----UGGCGa--UUGCCUCa------------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 68747 0.66 0.99131
Target:  5'- cCGGAGGCCGaCUGAgccgggccgcCGGGGcgCCGGAc -3'
miRNA:   3'- cGCUUCUGGC-GAUU----------GCCUCa-GGCUUu -5'
10719 5' -52.2 NC_002794.1 + 80730 0.66 0.99131
Target:  5'- uCGAccuGGcccuCCGC-GACGGGGUCCGGGc -3'
miRNA:   3'- cGCU---UCu---GGCGaUUGCCUCAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 192184 0.66 0.99131
Target:  5'- gGCGAAGGCgGCcgaagcAACGGAcgacGUCuCGAAGa -3'
miRNA:   3'- -CGCUUCUGgCGa-----UUGCCU----CAG-GCUUU- -5'
10719 5' -52.2 NC_002794.1 + 115846 0.66 0.99131
Target:  5'- gGCGGgcucgggccugGGACgCGCga--GGGGUCCGggGc -3'
miRNA:   3'- -CGCU-----------UCUG-GCGauugCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 20396 0.66 0.990089
Target:  5'- uGCGGcgGGACCGggAGCGGGG-CCa--- -3'
miRNA:   3'- -CGCU--UCUGGCgaUUGCCUCaGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 121355 0.66 0.990089
Target:  5'- cGgGAAGuuCGUcGACGGcGUCCGAGc -3'
miRNA:   3'- -CgCUUCugGCGaUUGCCuCAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 187974 0.66 0.990089
Target:  5'- -gGGAGGCCGCUcauuGCGgGAGagacgagCCGAAAu -3'
miRNA:   3'- cgCUUCUGGCGAu---UGC-CUCa------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 144831 0.66 0.990089
Target:  5'- cGCGGAcGAgCCGCUGgaGCGG-GUgCCGAu- -3'
miRNA:   3'- -CGCUU-CU-GGCGAU--UGCCuCA-GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 55313 0.66 0.988738
Target:  5'- cGCGgcGGgCGCgGGCGGcuUCCGAGGa -3'
miRNA:   3'- -CGCuuCUgGCGaUUGCCucAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 102189 0.66 0.988738
Target:  5'- gGCGAGGaccuggcgGCCGCcgUGACGGAGgcccucuucaCCGAGc -3'
miRNA:   3'- -CGCUUC--------UGGCG--AUUGCCUCa---------GGCUUu -5'
10719 5' -52.2 NC_002794.1 + 185338 0.66 0.988306
Target:  5'- cGCGucGACCGCUcgcgcgccgccgcgAGCGG-G-CCGAAc -3'
miRNA:   3'- -CGCuuCUGGCGA--------------UUGCCuCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 41150 0.67 0.986772
Target:  5'- cGCGAAGACCGgCagucgAaaccgaguccucucGCGGAGgCCGAGc -3'
miRNA:   3'- -CGCUUCUGGC-Ga----U--------------UGCCUCaGGCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.