miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 167025 1.08 0.009512
Target:  5'- aGCGAAGACCGCUAACGGAGUCCGAAAc -3'
miRNA:   3'- -CGCUUCUGGCGAUUGCCUCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 1494 0.77 0.595382
Target:  5'- gGCGgcGACCGgcCUuauACGGGGUCCGGAGg -3'
miRNA:   3'- -CGCuuCUGGC--GAu--UGCCUCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 116007 0.77 0.609802
Target:  5'- cGCGGAGACCGCgguggcgauuggcGCGGGGaCCGGAGa -3'
miRNA:   3'- -CGCUUCUGGCGau-----------UGCCUCaGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 153412 0.76 0.657302
Target:  5'- cGCGAGcGCCGCgcGCGGAG-CCGAGc -3'
miRNA:   3'- -CGCUUcUGGCGauUGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 107162 0.75 0.708402
Target:  5'- gGCGAGGGCCGCcgcuacgcGGCGGAG-CCGGc- -3'
miRNA:   3'- -CGCUUCUGGCGa-------UUGCCUCaGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 14617 0.75 0.718462
Target:  5'- cGCGAcgGGGCCGgaGACGGGG-CCGGGc -3'
miRNA:   3'- -CGCU--UCUGGCgaUUGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 149355 0.73 0.804471
Target:  5'- cGCGggGG-CGUgGACGGAGUCCGc-- -3'
miRNA:   3'- -CGCuuCUgGCGaUUGCCUCAGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 137425 0.71 0.884827
Target:  5'- cGCGGAGACCGCgc-CGGcGcUCUGGAAc -3'
miRNA:   3'- -CGCUUCUGGCGauuGCCuC-AGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 92430 0.71 0.884827
Target:  5'- gGCGAGGACaCGCUGgccguGCGGGG-CCGc-- -3'
miRNA:   3'- -CGCUUCUG-GCGAU-----UGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 149698 0.71 0.89835
Target:  5'- cGCGggGGCCGcCUGGCGGGuGggCCGc-- -3'
miRNA:   3'- -CGCuuCUGGC-GAUUGCCU-Ca-GGCuuu -5'
10719 5' -52.2 NC_002794.1 + 146508 0.71 0.91093
Target:  5'- cGCGGagccccugcucgGGACCGC-GACGGA-UCCGGAGg -3'
miRNA:   3'- -CGCU------------UCUGGCGaUUGCCUcAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 145897 0.71 0.91333
Target:  5'- gGCGAGcgcgacgggggagucGACCGCgccgAGCGGAGgggCCGGc- -3'
miRNA:   3'- -CGCUU---------------CUGGCGa---UUGCCUCa--GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 178264 0.7 0.922546
Target:  5'- aGCGGgcuGACCGgaGACGGGGUCgguCGAGc -3'
miRNA:   3'- -CGCUu--CUGGCgaUUGCCUCAG---GCUUu -5'
10719 5' -52.2 NC_002794.1 + 14708 0.7 0.92852
Target:  5'- cGUGggGAgCGCUGcucgcggcuucggcuCGGGGUCCGGc- -3'
miRNA:   3'- -CGCuuCUgGCGAUu--------------GCCUCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 94404 0.69 0.94286
Target:  5'- uGCGggGACCGCggUGugGGGcgcGcCCGAc- -3'
miRNA:   3'- -CGCuuCUGGCG--AUugCCU---CaGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 145589 0.69 0.947334
Target:  5'- aGCGgcGGCCgGCUcccGCGGAGUCgGGc- -3'
miRNA:   3'- -CGCuuCUGG-CGAu--UGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 110614 0.69 0.951158
Target:  5'- aGCGGAGcgggagccgcggcGCCGCggcGGCGGGGUCgGGu- -3'
miRNA:   3'- -CGCUUC-------------UGGCGa--UUGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 70269 0.69 0.951571
Target:  5'- aCGGAGGCCGCgaaggcCGGAGagcaggCCGggGg -3'
miRNA:   3'- cGCUUCUGGCGauu---GCCUCa-----GGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 1888 0.68 0.962889
Target:  5'- cCGAGGcacCCGCcggccuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCUUCu--GGCGau-------UGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 35167 0.68 0.962889
Target:  5'- -aGGAGcACCGC--GCGGAGUgCGAGu -3'
miRNA:   3'- cgCUUC-UGGCGauUGCCUCAgGCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.