miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 42573 0.67 0.986611
Target:  5'- cGCGGcGGAcCCGCgGACGGAGgagggcgcggcggCCGGGAg -3'
miRNA:   3'- -CGCU-UCU-GGCGaUUGCCUCa------------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 15173 0.67 0.98561
Target:  5'- -gGAGGGCCGUUcgcCGGAGaCCGGGu -3'
miRNA:   3'- cgCUUCUGGCGAuu-GCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 19506 0.67 0.98561
Target:  5'- gGCGGAGgucgcGCCGCU--CGGAGcgCCGGc- -3'
miRNA:   3'- -CGCUUC-----UGGCGAuuGCCUCa-GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 190762 0.67 0.98561
Target:  5'- gGCGgcGGCCGCgcguccCGGuagaugaacucGGUCCGGGAc -3'
miRNA:   3'- -CGCuuCUGGCGauu---GCC-----------UCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 62311 0.67 0.985089
Target:  5'- cGCGcAGACggaaaaccgccccuCGCUGGCGGAGcCCGc-- -3'
miRNA:   3'- -CGCuUCUG--------------GCGAUUGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 2481 0.67 0.983816
Target:  5'- cGCGAGGGcgauCCGgUGGcCGGGGUCCa--- -3'
miRNA:   3'- -CGCUUCU----GGCgAUU-GCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 30041 0.67 0.981858
Target:  5'- cGCGugaacgaccGAGACCcggGCccGCGGGGUCCGGu- -3'
miRNA:   3'- -CGC---------UUCUGG---CGauUGCCUCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 124487 0.67 0.979727
Target:  5'- cGCccGGACCGCcgGAUGGAGUCgCGu-- -3'
miRNA:   3'- -CGcuUCUGGCGa-UUGCCUCAG-GCuuu -5'
10719 5' -52.2 NC_002794.1 + 90465 0.67 0.979727
Target:  5'- gGCG-AGGCCGCgcgcGGCGGGG-CCGc-- -3'
miRNA:   3'- -CGCuUCUGGCGa---UUGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 61754 0.68 0.977416
Target:  5'- cGCGAGGugUGCgagGgGGGGUCCu--- -3'
miRNA:   3'- -CGCUUCugGCGau-UgCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 40627 0.68 0.974916
Target:  5'- cGCGGAGuCCGCgAGCGcGAG-CUGAGc -3'
miRNA:   3'- -CGCUUCuGGCGaUUGC-CUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 128263 0.68 0.97222
Target:  5'- cGCGGucgGGGCCGagcGCGGAG-CCGAc- -3'
miRNA:   3'- -CGCU---UCUGGCgauUGCCUCaGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 142362 0.68 0.97222
Target:  5'- gGCGGAGGCgGCggaGGCGGAGggagcggCgGAGAc -3'
miRNA:   3'- -CGCUUCUGgCGa--UUGCCUCa------GgCUUU- -5'
10719 5' -52.2 NC_002794.1 + 115298 0.68 0.971939
Target:  5'- aCGggGACCGCUGcgccgccguccgcACGGucgccgcggcGUCCGGGc -3'
miRNA:   3'- cGCuuCUGGCGAU-------------UGCCu---------CAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 49424 0.68 0.969321
Target:  5'- gGCGgcGGCCGUc-ACGGcGUCCGGc- -3'
miRNA:   3'- -CGCuuCUGGCGauUGCCuCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 42624 0.68 0.969321
Target:  5'- uCGAcGACCGCgcucucacAGCGGAGUCgCGGc- -3'
miRNA:   3'- cGCUuCUGGCGa-------UUGCCUCAG-GCUuu -5'
10719 5' -52.2 NC_002794.1 + 95766 0.68 0.966213
Target:  5'- gGCGgcGGCCGC-GACGGcGG-CCGggGc -3'
miRNA:   3'- -CGCuuCUGGCGaUUGCC-UCaGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 143280 0.68 0.962889
Target:  5'- gGCGccGGCCGCU--CGGGGUCgGGc- -3'
miRNA:   3'- -CGCuuCUGGCGAuuGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 35167 0.68 0.962889
Target:  5'- -aGGAGcACCGC--GCGGAGUgCGAGu -3'
miRNA:   3'- cgCUUC-UGGCGauUGCCUCAgGCUUu -5'
10719 5' -52.2 NC_002794.1 + 107878 0.68 0.962889
Target:  5'- cGCGGAGGCgGCgcgGCGGgugcggcugccgGGUCUGAGGg -3'
miRNA:   3'- -CGCUUCUGgCGau-UGCC------------UCAGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.