miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 1494 0.77 0.595382
Target:  5'- gGCGgcGACCGgcCUuauACGGGGUCCGGAGg -3'
miRNA:   3'- -CGCuuCUGGC--GAu--UGCCUCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 1553 0.68 0.962889
Target:  5'- cCGAGGcacCCGCcggccuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCUUCu--GGCGau-------UGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 1824 0.66 0.993394
Target:  5'- cCGucGGCCuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCuuCUGGcgauUGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 1888 0.68 0.962889
Target:  5'- cCGAGGcacCCGCcggccuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCUUCu--GGCGau-------UGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 1951 0.68 0.962889
Target:  5'- cCGAGGcgcCCGCcggccuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCUUCu--GGCGau-------UGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 2013 0.68 0.962889
Target:  5'- cCGAGGcgcCCGCcggccuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCUUCu--GGCGau-------UGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 2481 0.67 0.983816
Target:  5'- cGCGAGGGcgauCCGgUGGcCGGGGUCCa--- -3'
miRNA:   3'- -CGCUUCU----GGCgAUU-GCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 14617 0.75 0.718462
Target:  5'- cGCGAcgGGGCCGgaGACGGGG-CCGGGc -3'
miRNA:   3'- -CGCU--UCUGGCgaUUGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 14708 0.7 0.92852
Target:  5'- cGUGggGAgCGCUGcucgcggcuucggcuCGGGGUCCGGc- -3'
miRNA:   3'- -CGCuuCUgGCGAUu--------------GCCUCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 15173 0.67 0.98561
Target:  5'- -gGAGGGCCGUUcgcCGGAGaCCGGGu -3'
miRNA:   3'- cgCUUCUGGCGAuu-GCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 19506 0.67 0.98561
Target:  5'- gGCGGAGgucgcGCCGCU--CGGAGcgCCGGc- -3'
miRNA:   3'- -CGCUUC-----UGGCGAuuGCCUCa-GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 20396 0.66 0.990089
Target:  5'- uGCGGcgGGACCGggAGCGGGG-CCa--- -3'
miRNA:   3'- -CGCU--UCUGGCgaUUGCCUCaGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 30041 0.67 0.981858
Target:  5'- cGCGugaacgaccGAGACCcggGCccGCGGGGUCCGGu- -3'
miRNA:   3'- -CGC---------UUCUGG---CGauUGCCUCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 35167 0.68 0.962889
Target:  5'- -aGGAGcACCGC--GCGGAGUgCGAGu -3'
miRNA:   3'- cgCUUC-UGGCGauUGCCUCAgGCUUu -5'
10719 5' -52.2 NC_002794.1 + 40627 0.68 0.974916
Target:  5'- cGCGGAGuCCGCgAGCGcGAG-CUGAGc -3'
miRNA:   3'- -CGCUUCuGGCGaUUGC-CUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 41150 0.67 0.986772
Target:  5'- cGCGAAGACCGgCagucgAaaccgaguccucucGCGGAGgCCGAGc -3'
miRNA:   3'- -CGCUUCUGGC-Ga----U--------------UGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 42573 0.67 0.986611
Target:  5'- cGCGGcGGAcCCGCgGACGGAGgagggcgcggcggCCGGGAg -3'
miRNA:   3'- -CGCU-UCU-GGCGaUUGCCUCa------------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 42624 0.68 0.969321
Target:  5'- uCGAcGACCGCgcucucacAGCGGAGUCgCGGc- -3'
miRNA:   3'- cGCUuCUGGCGa-------UUGCCUCAG-GCUuu -5'
10719 5' -52.2 NC_002794.1 + 49019 0.68 0.962889
Target:  5'- cGCGgcGGCCGC-GGCGucGUCCGGc- -3'
miRNA:   3'- -CGCuuCUGGCGaUUGCcuCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 49424 0.68 0.969321
Target:  5'- gGCGgcGGCCGUc-ACGGcGUCCGGc- -3'
miRNA:   3'- -CGCuuCUGGCGauUGCCuCAGGCUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.