miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 55313 0.66 0.988738
Target:  5'- cGCGgcGGgCGCgGGCGGcuUCCGAGGa -3'
miRNA:   3'- -CGCuuCUgGCGaUUGCCucAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 61754 0.68 0.977416
Target:  5'- cGCGAGGugUGCgagGgGGGGUCCu--- -3'
miRNA:   3'- -CGCUUCugGCGau-UgCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 62311 0.67 0.985089
Target:  5'- cGCGcAGACggaaaaccgccccuCGCUGGCGGAGcCCGc-- -3'
miRNA:   3'- -CGCuUCUG--------------GCGAUUGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 68747 0.66 0.99131
Target:  5'- cCGGAGGCCGaCUGAgccgggccgcCGGGGcgCCGGAc -3'
miRNA:   3'- cGCUUCUGGC-GAUU----------GCCUCa-GGCUUu -5'
10719 5' -52.2 NC_002794.1 + 70269 0.69 0.951571
Target:  5'- aCGGAGGCCGCgaaggcCGGAGagcaggCCGggGg -3'
miRNA:   3'- cGCUUCUGGCGauu---GCCUCa-----GGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 80007 0.66 0.992409
Target:  5'- aCGAGGACgGCgacgaGGAGgCCGggGa -3'
miRNA:   3'- cGCUUCUGgCGauug-CCUCaGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 80730 0.66 0.99131
Target:  5'- uCGAccuGGcccuCCGC-GACGGGGUCCGGGc -3'
miRNA:   3'- cGCU---UCu---GGCGaUUGCCUCAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 81584 0.66 0.993394
Target:  5'- aCGAAGAagaagacggacCCGCggcCGGAGUCgCGGAc -3'
miRNA:   3'- cGCUUCU-----------GGCGauuGCCUCAG-GCUUu -5'
10719 5' -52.2 NC_002794.1 + 82573 0.66 0.991983
Target:  5'- gGCGAGGccgacGCCGCcgaGACGGAGacccucuccgcggCCGAAGu -3'
miRNA:   3'- -CGCUUC-----UGGCGa--UUGCCUCa------------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 90465 0.67 0.979727
Target:  5'- gGCG-AGGCCGCgcgcGGCGGGG-CCGc-- -3'
miRNA:   3'- -CGCuUCUGGCGa---UUGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 92430 0.71 0.884827
Target:  5'- gGCGAGGACaCGCUGgccguGCGGGG-CCGc-- -3'
miRNA:   3'- -CGCUUCUG-GCGAU-----UGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 94404 0.69 0.94286
Target:  5'- uGCGggGACCGCggUGugGGGcgcGcCCGAc- -3'
miRNA:   3'- -CGCuuCUGGCG--AUugCCU---CaGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 95766 0.68 0.966213
Target:  5'- gGCGgcGGCCGC-GACGGcGG-CCGggGc -3'
miRNA:   3'- -CGCuuCUGGCGaUUGCC-UCaGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 102189 0.66 0.988738
Target:  5'- gGCGAGGaccuggcgGCCGCcgUGACGGAGgcccucuucaCCGAGc -3'
miRNA:   3'- -CGCUUC--------UGGCG--AUUGCCUCa---------GGCUUu -5'
10719 5' -52.2 NC_002794.1 + 107162 0.75 0.708402
Target:  5'- gGCGAGGGCCGCcgcuacgcGGCGGAG-CCGGc- -3'
miRNA:   3'- -CGCUUCUGGCGa-------UUGCCUCaGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 107878 0.68 0.962889
Target:  5'- cGCGGAGGCgGCgcgGCGGgugcggcugccgGGUCUGAGGg -3'
miRNA:   3'- -CGCUUCUGgCGau-UGCC------------UCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 110614 0.69 0.951158
Target:  5'- aGCGGAGcgggagccgcggcGCCGCggcGGCGGGGUCgGGu- -3'
miRNA:   3'- -CGCUUC-------------UGGCGa--UUGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 115298 0.68 0.971939
Target:  5'- aCGggGACCGCUGcgccgccguccgcACGGucgccgcggcGUCCGGGc -3'
miRNA:   3'- cGCuuCUGGCGAU-------------UGCCu---------CAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 115846 0.66 0.99131
Target:  5'- gGCGGgcucgggccugGGACgCGCga--GGGGUCCGggGc -3'
miRNA:   3'- -CGCU-----------UCUG-GCGauugCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 116007 0.77 0.609802
Target:  5'- cGCGGAGACCGCgguggcgauuggcGCGGGGaCCGGAGa -3'
miRNA:   3'- -CGCUUCUGGCGau-----------UGCCUCaGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.