miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 192184 0.66 0.99131
Target:  5'- gGCGAAGGCgGCcgaagcAACGGAcgacGUCuCGAAGa -3'
miRNA:   3'- -CGCUUCUGgCGa-----UUGCCU----CAG-GCUUU- -5'
10719 5' -52.2 NC_002794.1 + 190762 0.67 0.98561
Target:  5'- gGCGgcGGCCGCgcguccCGGuagaugaacucGGUCCGGGAc -3'
miRNA:   3'- -CGCuuCUGGCGauu---GCC-----------UCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 187974 0.66 0.990089
Target:  5'- -gGGAGGCCGCUcauuGCGgGAGagacgagCCGAAAu -3'
miRNA:   3'- cgCUUCUGGCGAu---UGC-CUCa------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 185338 0.66 0.988306
Target:  5'- cGCGucGACCGCUcgcgcgccgccgcgAGCGG-G-CCGAAc -3'
miRNA:   3'- -CGCuuCUGGCGA--------------UUGCCuCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 178264 0.7 0.922546
Target:  5'- aGCGGgcuGACCGgaGACGGGGUCgguCGAGc -3'
miRNA:   3'- -CGCUu--CUGGCgaUUGCCUCAG---GCUUu -5'
10719 5' -52.2 NC_002794.1 + 176849 0.66 0.992304
Target:  5'- aGCGAGGuCgGUUAgaucaguACGGAGUgCGAGc -3'
miRNA:   3'- -CGCUUCuGgCGAU-------UGCCUCAgGCUUu -5'
10719 5' -52.2 NC_002794.1 + 167025 1.08 0.009512
Target:  5'- aGCGAAGACCGCUAACGGAGUCCGAAAc -3'
miRNA:   3'- -CGCUUCUGGCGAUUGCCUCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 153412 0.76 0.657302
Target:  5'- cGCGAGcGCCGCgcGCGGAG-CCGAGc -3'
miRNA:   3'- -CGCUUcUGGCGauUGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 149698 0.71 0.89835
Target:  5'- cGCGggGGCCGcCUGGCGGGuGggCCGc-- -3'
miRNA:   3'- -CGCuuCUGGC-GAUUGCCU-Ca-GGCuuu -5'
10719 5' -52.2 NC_002794.1 + 149355 0.73 0.804471
Target:  5'- cGCGggGG-CGUgGACGGAGUCCGc-- -3'
miRNA:   3'- -CGCuuCUgGCGaUUGCCUCAGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 146508 0.71 0.91093
Target:  5'- cGCGGagccccugcucgGGACCGC-GACGGA-UCCGGAGg -3'
miRNA:   3'- -CGCU------------UCUGGCGaUUGCCUcAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 145897 0.71 0.91333
Target:  5'- gGCGAGcgcgacgggggagucGACCGCgccgAGCGGAGgggCCGGc- -3'
miRNA:   3'- -CGCUU---------------CUGGCGa---UUGCCUCa--GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 145589 0.69 0.947334
Target:  5'- aGCGgcGGCCgGCUcccGCGGAGUCgGGc- -3'
miRNA:   3'- -CGCuuCUGG-CGAu--UGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 144831 0.66 0.990089
Target:  5'- cGCGGAcGAgCCGCUGgaGCGG-GUgCCGAu- -3'
miRNA:   3'- -CGCUU-CU-GGCGAU--UGCCuCA-GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 143280 0.68 0.962889
Target:  5'- gGCGccGGCCGCU--CGGGGUCgGGc- -3'
miRNA:   3'- -CGCuuCUGGCGAuuGCCUCAGgCUuu -5'
10719 5' -52.2 NC_002794.1 + 142362 0.68 0.97222
Target:  5'- gGCGGAGGCgGCggaGGCGGAGggagcggCgGAGAc -3'
miRNA:   3'- -CGCUUCUGgCGa--UUGCCUCa------GgCUUU- -5'
10719 5' -52.2 NC_002794.1 + 140019 0.66 0.993394
Target:  5'- cGCGGAGGCCGCggcccccGCGGGcggCgGGAGa -3'
miRNA:   3'- -CGCUUCUGGCGau-----UGCCUca-GgCUUU- -5'
10719 5' -52.2 NC_002794.1 + 137526 0.66 0.992409
Target:  5'- cGUGGAuGACCGa-GACGGAGUCUu--- -3'
miRNA:   3'- -CGCUU-CUGGCgaUUGCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 137425 0.71 0.884827
Target:  5'- cGCGGAGACCGCgc-CGGcGcUCUGGAAc -3'
miRNA:   3'- -CGCUUCUGGCGauuGCCuC-AGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 128263 0.68 0.97222
Target:  5'- cGCGGucgGGGCCGagcGCGGAG-CCGAc- -3'
miRNA:   3'- -CGCU---UCUGGCgauUGCCUCaGGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.