Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10719 | 5' | -52.2 | NC_002794.1 | + | 124487 | 0.67 | 0.979727 |
Target: 5'- cGCccGGACCGCcgGAUGGAGUCgCGu-- -3' miRNA: 3'- -CGcuUCUGGCGa-UUGCCUCAG-GCuuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 124013 | 0.66 | 0.992409 |
Target: 5'- aGCGGGcGGCCGCggaagaGACGGuggccgucuGUCUGAAGa -3' miRNA: 3'- -CGCUU-CUGGCGa-----UUGCCu--------CAGGCUUU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 121355 | 0.66 | 0.990089 |
Target: 5'- cGgGAAGuuCGUcGACGGcGUCCGAGc -3' miRNA: 3'- -CgCUUCugGCGaUUGCCuCAGGCUUu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 116007 | 0.77 | 0.609802 |
Target: 5'- cGCGGAGACCGCgguggcgauuggcGCGGGGaCCGGAGa -3' miRNA: 3'- -CGCUUCUGGCGau-----------UGCCUCaGGCUUU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 115846 | 0.66 | 0.99131 |
Target: 5'- gGCGGgcucgggccugGGACgCGCga--GGGGUCCGggGc -3' miRNA: 3'- -CGCU-----------UCUG-GCGauugCCUCAGGCuuU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 115298 | 0.68 | 0.971939 |
Target: 5'- aCGggGACCGCUGcgccgccguccgcACGGucgccgcggcGUCCGGGc -3' miRNA: 3'- cGCuuCUGGCGAU-------------UGCCu---------CAGGCUUu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 110614 | 0.69 | 0.951158 |
Target: 5'- aGCGGAGcgggagccgcggcGCCGCggcGGCGGGGUCgGGu- -3' miRNA: 3'- -CGCUUC-------------UGGCGa--UUGCCUCAGgCUuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 107878 | 0.68 | 0.962889 |
Target: 5'- cGCGGAGGCgGCgcgGCGGgugcggcugccgGGUCUGAGGg -3' miRNA: 3'- -CGCUUCUGgCGau-UGCC------------UCAGGCUUU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 107162 | 0.75 | 0.708402 |
Target: 5'- gGCGAGGGCCGCcgcuacgcGGCGGAG-CCGGc- -3' miRNA: 3'- -CGCUUCUGGCGa-------UUGCCUCaGGCUuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 102189 | 0.66 | 0.988738 |
Target: 5'- gGCGAGGaccuggcgGCCGCcgUGACGGAGgcccucuucaCCGAGc -3' miRNA: 3'- -CGCUUC--------UGGCG--AUUGCCUCa---------GGCUUu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 95766 | 0.68 | 0.966213 |
Target: 5'- gGCGgcGGCCGC-GACGGcGG-CCGggGc -3' miRNA: 3'- -CGCuuCUGGCGaUUGCC-UCaGGCuuU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 94404 | 0.69 | 0.94286 |
Target: 5'- uGCGggGACCGCggUGugGGGcgcGcCCGAc- -3' miRNA: 3'- -CGCuuCUGGCG--AUugCCU---CaGGCUuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 92430 | 0.71 | 0.884827 |
Target: 5'- gGCGAGGACaCGCUGgccguGCGGGG-CCGc-- -3' miRNA: 3'- -CGCUUCUG-GCGAU-----UGCCUCaGGCuuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 90465 | 0.67 | 0.979727 |
Target: 5'- gGCG-AGGCCGCgcgcGGCGGGG-CCGc-- -3' miRNA: 3'- -CGCuUCUGGCGa---UUGCCUCaGGCuuu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 82573 | 0.66 | 0.991983 |
Target: 5'- gGCGAGGccgacGCCGCcgaGACGGAGacccucuccgcggCCGAAGu -3' miRNA: 3'- -CGCUUC-----UGGCGa--UUGCCUCa------------GGCUUU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 81584 | 0.66 | 0.993394 |
Target: 5'- aCGAAGAagaagacggacCCGCggcCGGAGUCgCGGAc -3' miRNA: 3'- cGCUUCU-----------GGCGauuGCCUCAG-GCUUu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 80730 | 0.66 | 0.99131 |
Target: 5'- uCGAccuGGcccuCCGC-GACGGGGUCCGGGc -3' miRNA: 3'- cGCU---UCu---GGCGaUUGCCUCAGGCUUu -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 80007 | 0.66 | 0.992409 |
Target: 5'- aCGAGGACgGCgacgaGGAGgCCGggGa -3' miRNA: 3'- cGCUUCUGgCGauug-CCUCaGGCuuU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 70269 | 0.69 | 0.951571 |
Target: 5'- aCGGAGGCCGCgaaggcCGGAGagcaggCCGggGg -3' miRNA: 3'- cGCUUCUGGCGauu---GCCUCa-----GGCuuU- -5' |
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10719 | 5' | -52.2 | NC_002794.1 | + | 68747 | 0.66 | 0.99131 |
Target: 5'- cCGGAGGCCGaCUGAgccgggccgcCGGGGcgCCGGAc -3' miRNA: 3'- cGCUUCUGGC-GAUU----------GCCUCa-GGCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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