miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10719 5' -52.2 NC_002794.1 + 124013 0.66 0.992409
Target:  5'- aGCGGGcGGCCGCggaagaGACGGuggccgucuGUCUGAAGa -3'
miRNA:   3'- -CGCUU-CUGGCGa-----UUGCCu--------CAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 80007 0.66 0.992409
Target:  5'- aCGAGGACgGCgacgaGGAGgCCGggGa -3'
miRNA:   3'- cGCUUCUGgCGauug-CCUCaGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 140019 0.66 0.993394
Target:  5'- cGCGGAGGCCGCggcccccGCGGGcggCgGGAGa -3'
miRNA:   3'- -CGCUUCUGGCGau-----UGCCUca-GgCUUU- -5'
10719 5' -52.2 NC_002794.1 + 1824 0.66 0.993394
Target:  5'- cCGucGGCCuuauACGGGGUCCGggGg -3'
miRNA:   3'- cGCuuCUGGcgauUGCCUCAGGCuuU- -5'
10719 5' -52.2 NC_002794.1 + 137526 0.66 0.992409
Target:  5'- cGUGGAuGACCGa-GACGGAGUCUu--- -3'
miRNA:   3'- -CGCUU-CUGGCgaUUGCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 121355 0.66 0.990089
Target:  5'- cGgGAAGuuCGUcGACGGcGUCCGAGc -3'
miRNA:   3'- -CgCUUCugGCGaUUGCCuCAGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 20396 0.66 0.990089
Target:  5'- uGCGGcgGGACCGggAGCGGGG-CCa--- -3'
miRNA:   3'- -CGCU--UCUGGCgaUUGCCUCaGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 61754 0.68 0.977416
Target:  5'- cGCGAGGugUGCgagGgGGGGUCCu--- -3'
miRNA:   3'- -CGCUUCugGCGau-UgCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 124487 0.67 0.979727
Target:  5'- cGCccGGACCGCcgGAUGGAGUCgCGu-- -3'
miRNA:   3'- -CGcuUCUGGCGa-UUGCCUCAG-GCuuu -5'
10719 5' -52.2 NC_002794.1 + 30041 0.67 0.981858
Target:  5'- cGCGugaacgaccGAGACCcggGCccGCGGGGUCCGGu- -3'
miRNA:   3'- -CGC---------UUCUGG---CGauUGCCUCAGGCUuu -5'
10719 5' -52.2 NC_002794.1 + 62311 0.67 0.985089
Target:  5'- cGCGcAGACggaaaaccgccccuCGCUGGCGGAGcCCGc-- -3'
miRNA:   3'- -CGCuUCUG--------------GCGAUUGCCUCaGGCuuu -5'
10719 5' -52.2 NC_002794.1 + 2481 0.67 0.983816
Target:  5'- cGCGAGGGcgauCCGgUGGcCGGGGUCCa--- -3'
miRNA:   3'- -CGCUUCU----GGCgAUU-GCCUCAGGcuuu -5'
10719 5' -52.2 NC_002794.1 + 190762 0.67 0.98561
Target:  5'- gGCGgcGGCCGCgcguccCGGuagaugaacucGGUCCGGGAc -3'
miRNA:   3'- -CGCuuCUGGCGauu---GCC-----------UCAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 19506 0.67 0.98561
Target:  5'- gGCGGAGgucgcGCCGCU--CGGAGcgCCGGc- -3'
miRNA:   3'- -CGCUUC-----UGGCGAuuGCCUCa-GGCUuu -5'
10719 5' -52.2 NC_002794.1 + 15173 0.67 0.98561
Target:  5'- -gGAGGGCCGUUcgcCGGAGaCCGGGu -3'
miRNA:   3'- cgCUUCUGGCGAuu-GCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 42573 0.67 0.986611
Target:  5'- cGCGGcGGAcCCGCgGACGGAGgagggcgcggcggCCGGGAg -3'
miRNA:   3'- -CGCU-UCU-GGCGaUUGCCUCa------------GGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 41150 0.67 0.986772
Target:  5'- cGCGAAGACCGgCagucgAaaccgaguccucucGCGGAGgCCGAGc -3'
miRNA:   3'- -CGCUUCUGGC-Ga----U--------------UGCCUCaGGCUUu -5'
10719 5' -52.2 NC_002794.1 + 102189 0.66 0.988738
Target:  5'- gGCGAGGaccuggcgGCCGCcgUGACGGAGgcccucuucaCCGAGc -3'
miRNA:   3'- -CGCUUC--------UGGCG--AUUGCCUCa---------GGCUUu -5'
10719 5' -52.2 NC_002794.1 + 55313 0.66 0.988738
Target:  5'- cGCGgcGGgCGCgGGCGGcuUCCGAGGa -3'
miRNA:   3'- -CGCuuCUgGCGaUUGCCucAGGCUUU- -5'
10719 5' -52.2 NC_002794.1 + 185338 0.66 0.988306
Target:  5'- cGCGucGACCGCUcgcgcgccgccgcgAGCGG-G-CCGAAc -3'
miRNA:   3'- -CGCuuCUGGCGA--------------UUGCCuCaGGCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.