miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1072 5' -54.3 NC_000929.1 + 11011 0.7 0.436961
Target:  5'- cCGCCGuucugucCGGGGGGUugUGG-CACa- -3'
miRNA:   3'- -GCGGCuu-----GCCUCCUAugACCuGUGcu -5'
1072 5' -54.3 NC_000929.1 + 16034 0.66 0.654024
Target:  5'- uGCCGAuauAUGGGGGcguCUGGAUGCc- -3'
miRNA:   3'- gCGGCU---UGCCUCCuauGACCUGUGcu -5'
1072 5' -54.3 NC_000929.1 + 30435 1.09 0.00083
Target:  5'- cCGCCGAACGGAGGAUACUGGACACGAu -3'
miRNA:   3'- -GCGGCUUGCCUCCUAUGACCUGUGCU- -5'
1072 5' -54.3 NC_000929.1 + 25577 0.69 0.488139
Target:  5'- aCGCCGggUGGGGGuaaugccaGUACaGGGCGUGGu -3'
miRNA:   3'- -GCGGCuuGCCUCC--------UAUGaCCUGUGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.