miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10720 3' -54 NC_002794.1 + 143751 0.66 0.983984
Target:  5'- gCGCcGCCGGGGggcuccgcUCGUcGUCGGUGUg-- -3'
miRNA:   3'- -GCGaUGGCUCU--------GGCA-CAGCCACAacu -5'
10720 3' -54 NC_002794.1 + 148102 0.66 0.983984
Target:  5'- aGCUGCCGcucaAGAagcgaCG-GUCGGUGUcGGg -3'
miRNA:   3'- gCGAUGGC----UCUg----GCaCAGCCACAaCU- -5'
10720 3' -54 NC_002794.1 + 32505 0.66 0.982089
Target:  5'- aCGUcuUGCCGGcucccGCCGUGcCGGUGaUGAg -3'
miRNA:   3'- -GCG--AUGGCUc----UGGCACaGCCACaACU- -5'
10720 3' -54 NC_002794.1 + 102667 0.66 0.98003
Target:  5'- aGCUGCCGAgcgugggcGACCGggUGUCGuacGUGcUGAc -3'
miRNA:   3'- gCGAUGGCU--------CUGGC--ACAGC---CACaACU- -5'
10720 3' -54 NC_002794.1 + 72312 0.66 0.97539
Target:  5'- aGCUGCCGcAGACCuuGUaaauauugcaGUCGGUGg--- -3'
miRNA:   3'- gCGAUGGC-UCUGG--CA----------CAGCCACaacu -5'
10720 3' -54 NC_002794.1 + 18067 0.67 0.972795
Target:  5'- aCGCcGCCuGucuGugCGUGUCGGUGg--- -3'
miRNA:   3'- -GCGaUGG-Cu--CugGCACAGCCACaacu -5'
10720 3' -54 NC_002794.1 + 94490 0.67 0.970008
Target:  5'- aCGCgGCCGcGGGCCGUGgCGGgGaUGAa -3'
miRNA:   3'- -GCGaUGGC-UCUGGCACaGCCaCaACU- -5'
10720 3' -54 NC_002794.1 + 125848 0.67 0.963834
Target:  5'- gCGCUGCCGgcuggacaagcGGGCCGUGUgGGa----- -3'
miRNA:   3'- -GCGAUGGC-----------UCUGGCACAgCCacaacu -5'
10720 3' -54 NC_002794.1 + 145067 0.67 0.956822
Target:  5'- aGCUggcGgCGGGGCCGgacagcaCGGUGUUGAa -3'
miRNA:   3'- gCGA---UgGCUCUGGCaca----GCCACAACU- -5'
10720 3' -54 NC_002794.1 + 94520 0.68 0.95299
Target:  5'- aCGUUGCaGAGACUGUGcgUGGUGUg-- -3'
miRNA:   3'- -GCGAUGgCUCUGGCACa-GCCACAacu -5'
10720 3' -54 NC_002794.1 + 176474 0.73 0.757898
Target:  5'- gCGCcGCC-AGACCGUGUCGGU--UGGu -3'
miRNA:   3'- -GCGaUGGcUCUGGCACAGCCAcaACU- -5'
10720 3' -54 NC_002794.1 + 31275 0.73 0.757898
Target:  5'- aCGCcgACCGAG-CUGUGUCGGaUGUaggUGAu -3'
miRNA:   3'- -GCGa-UGGCUCuGGCACAGCC-ACA---ACU- -5'
10720 3' -54 NC_002794.1 + 163286 1.1 0.006024
Target:  5'- cCGCUACCGAGACCGUGUCGGUGUUGAa -3'
miRNA:   3'- -GCGAUGGCUCUGGCACAGCCACAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.