miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10721 3' -52.1 NC_002794.1 + 6542 0.66 0.992919
Target:  5'- gGCcgACGCGGuguuGCGAcaCAUGGCCAUc -3'
miRNA:   3'- gUGa-UGUGCC----UGCUaaGUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 129058 0.66 0.99187
Target:  5'- ---gGCGCGcGACGGUgugUCGCGGCUg-- -3'
miRNA:   3'- gugaUGUGC-CUGCUA---AGUGCCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 169450 0.66 0.99187
Target:  5'- uGCUACggugcaACGGugGGUUCGgGGCgAc- -3'
miRNA:   3'- gUGAUG------UGCCugCUAAGUgCCGgUaa -5'
10721 3' -52.1 NC_002794.1 + 91254 0.66 0.99187
Target:  5'- gCGCU-CGCGGACGccGUUCguggaccggcGCGGCCu-- -3'
miRNA:   3'- -GUGAuGUGCCUGC--UAAG----------UGCCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 63164 0.66 0.99187
Target:  5'- uGCUGCACGGcCGAggccgcgaaGCGGUCGc- -3'
miRNA:   3'- gUGAUGUGCCuGCUaag------UGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 186275 0.66 0.990702
Target:  5'- cCGCcugGCGCGG-CGGcacCGCGGCCAg- -3'
miRNA:   3'- -GUGa--UGUGCCuGCUaa-GUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 185171 0.66 0.990702
Target:  5'- cCGCcgGCGCGGcGCGGUcggCGCGGUCGg- -3'
miRNA:   3'- -GUGa-UGUGCC-UGCUAa--GUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 147465 0.66 0.989406
Target:  5'- uCACUACGCGcgcGACGAcUCGCuguucgagcuGGCCGa- -3'
miRNA:   3'- -GUGAUGUGC---CUGCUaAGUG----------CCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 56302 0.66 0.989406
Target:  5'- gCGC-GCGCGGucGCGGUcgcUgGCGGCCGUg -3'
miRNA:   3'- -GUGaUGUGCC--UGCUA---AgUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 91220 0.66 0.989406
Target:  5'- aCGCgACgGCGGACGGcgCGgCGGCCGUc -3'
miRNA:   3'- -GUGaUG-UGCCUGCUaaGU-GCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 91143 0.66 0.989406
Target:  5'- ---gGCGCGGACGGUgcugCugGGCg--- -3'
miRNA:   3'- gugaUGUGCCUGCUAa---GugCCGguaa -5'
10721 3' -52.1 NC_002794.1 + 183147 0.66 0.987973
Target:  5'- aGCUcCGCGGACa---CGCGGCCGg- -3'
miRNA:   3'- gUGAuGUGCCUGcuaaGUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 114545 0.66 0.987973
Target:  5'- aGCUGCGCGaGCuGUUCuuCGGCCAg- -3'
miRNA:   3'- gUGAUGUGCcUGcUAAGu-GCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 131012 0.66 0.987973
Target:  5'- gGCU-CACGGGuCGGUggucgugcggCGCGGCCGg- -3'
miRNA:   3'- gUGAuGUGCCU-GCUAa---------GUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 81244 0.66 0.986395
Target:  5'- gCGCgcacCACGGACGAcgCGCuGGCCu-- -3'
miRNA:   3'- -GUGau--GUGCCUGCUaaGUG-CCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 127353 0.67 0.984662
Target:  5'- aCGCU-CGCGG-CGGcggCGCGGCCGc- -3'
miRNA:   3'- -GUGAuGUGCCuGCUaa-GUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 181816 0.67 0.984662
Target:  5'- aACcGCACGucGgGGUUCGCGGCCAg- -3'
miRNA:   3'- gUGaUGUGCc-UgCUAAGUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 12409 0.67 0.982766
Target:  5'- cCGC-ACGCGGACGg--CGCGcGCCGa- -3'
miRNA:   3'- -GUGaUGUGCCUGCuaaGUGC-CGGUaa -5'
10721 3' -52.1 NC_002794.1 + 123059 0.67 0.980698
Target:  5'- cCGCUGCugGgGACGAUgcagaACGuGCCGa- -3'
miRNA:   3'- -GUGAUGugC-CUGCUAag---UGC-CGGUaa -5'
10721 3' -52.1 NC_002794.1 + 176596 0.67 0.978451
Target:  5'- gACU-CACGGagaGCGGccggCACGGCCAUc -3'
miRNA:   3'- gUGAuGUGCC---UGCUaa--GUGCCGGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.