miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10721 3' -52.1 NC_002794.1 + 6542 0.66 0.992919
Target:  5'- gGCcgACGCGGuguuGCGAcaCAUGGCCAUc -3'
miRNA:   3'- gUGa-UGUGCC----UGCUaaGUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 12409 0.67 0.982766
Target:  5'- cCGC-ACGCGGACGg--CGCGcGCCGa- -3'
miRNA:   3'- -GUGaUGUGCCUGCuaaGUGC-CGGUaa -5'
10721 3' -52.1 NC_002794.1 + 15426 0.71 0.893716
Target:  5'- cCACcAC-CGGAUGAUUCccaACGGCCAc- -3'
miRNA:   3'- -GUGaUGuGCCUGCUAAG---UGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 34750 0.71 0.893716
Target:  5'- gCGCgacgGCGCGGugGGacgcggCACGGCCGc- -3'
miRNA:   3'- -GUGa---UGUGCCugCUaa----GUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 52482 0.78 0.551841
Target:  5'- aACUGCGCGGACGAccUggccaucgcgcucaUCAUGGCCGUg -3'
miRNA:   3'- gUGAUGUGCCUGCU--A--------------AGUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 56302 0.66 0.989406
Target:  5'- gCGC-GCGCGGucGCGGUcgcUgGCGGCCGUg -3'
miRNA:   3'- -GUGaUGUGCC--UGCUA---AgUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 63164 0.66 0.99187
Target:  5'- uGCUGCACGGcCGAggccgcgaaGCGGUCGc- -3'
miRNA:   3'- gUGAUGUGCCuGCUaag------UGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 78445 0.68 0.970553
Target:  5'- gGCggACGCGGACGcgcUCGCGGUCu-- -3'
miRNA:   3'- gUGa-UGUGCCUGCua-AGUGCCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 81244 0.66 0.986395
Target:  5'- gCGCgcacCACGGACGAcgCGCuGGCCu-- -3'
miRNA:   3'- -GUGau--GUGCCUGCUaaGUG-CCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 91143 0.66 0.989406
Target:  5'- ---gGCGCGGACGGUgcugCugGGCg--- -3'
miRNA:   3'- gugaUGUGCCUGCUAa---GugCCGguaa -5'
10721 3' -52.1 NC_002794.1 + 91220 0.66 0.989406
Target:  5'- aCGCgACgGCGGACGGcgCGgCGGCCGUc -3'
miRNA:   3'- -GUGaUG-UGCCUGCUaaGU-GCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 91254 0.66 0.99187
Target:  5'- gCGCU-CGCGGACGccGUUCguggaccggcGCGGCCu-- -3'
miRNA:   3'- -GUGAuGUGCCUGC--UAAG----------UGCCGGuaa -5'
10721 3' -52.1 NC_002794.1 + 92409 0.69 0.957059
Target:  5'- uCGCUgaucgacccgaGCACGGGCGAggacaCGCuGGCCGUg -3'
miRNA:   3'- -GUGA-----------UGUGCCUGCUaa---GUG-CCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 92492 0.69 0.944521
Target:  5'- cCGgUGCGUGGACGAg--GCGGCCAUg -3'
miRNA:   3'- -GUgAUGUGCCUGCUaagUGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 97079 0.68 0.960768
Target:  5'- gCGCUucGCGCGGACGA-UCACGuGCgCGc- -3'
miRNA:   3'- -GUGA--UGUGCCUGCUaAGUGC-CG-GUaa -5'
10721 3' -52.1 NC_002794.1 + 100315 0.7 0.9244
Target:  5'- cCGCUggcacGCGCGGcCGGcgCACGGCCGg- -3'
miRNA:   3'- -GUGA-----UGUGCCuGCUaaGUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 100778 0.72 0.864903
Target:  5'- gAgUACACGcGccuGCGGUUCGCGGCCGc- -3'
miRNA:   3'- gUgAUGUGC-C---UGCUAAGUGCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 114545 0.66 0.987973
Target:  5'- aGCUGCGCGaGCuGUUCuuCGGCCAg- -3'
miRNA:   3'- gUGAUGUGCcUGcUAAGu-GCCGGUaa -5'
10721 3' -52.1 NC_002794.1 + 116845 0.68 0.96425
Target:  5'- ---cGCGCGGugGAUcuUCaugcgGCGGCCGUg -3'
miRNA:   3'- gugaUGUGCCugCUA--AG-----UGCCGGUAa -5'
10721 3' -52.1 NC_002794.1 + 123059 0.67 0.980698
Target:  5'- cCGCUGCugGgGACGAUgcagaACGuGCCGa- -3'
miRNA:   3'- -GUGAUGugC-CUGCUAag---UGC-CGGUaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.