miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10721 5' -61.6 NC_002794.1 + 33650 0.66 0.771741
Target:  5'- gCA-CGGGcGCGcUGAGCgUGCACuCGCGc -3'
miRNA:   3'- gGUaGCCC-CGC-ACUCG-GCGUG-GCGCa -5'
10721 5' -61.6 NC_002794.1 + 91232 0.66 0.771741
Target:  5'- aCGgcgCGGcGGcCGUcGGGCUGCGCuCGCGg -3'
miRNA:   3'- gGUa--GCC-CC-GCA-CUCGGCGUG-GCGCa -5'
10721 5' -61.6 NC_002794.1 + 38247 0.66 0.770858
Target:  5'- cCCGcagCGGGGCcuccugcGUGAGgCGCGgcccCCGCGc -3'
miRNA:   3'- -GGUa--GCCCCG-------CACUCgGCGU----GGCGCa -5'
10721 5' -61.6 NC_002794.1 + 101037 0.66 0.76287
Target:  5'- ---cCGGGcGCGggucGGCCGCuACUGCGUg -3'
miRNA:   3'- gguaGCCC-CGCac--UCGGCG-UGGCGCA- -5'
10721 5' -61.6 NC_002794.1 + 49400 0.66 0.761977
Target:  5'- gCCGUCGGccacggcggccgcGGCGgcgGcGGCCGuCACgGCGUc -3'
miRNA:   3'- -GGUAGCC-------------CCGCa--C-UCGGC-GUGgCGCA- -5'
10721 5' -61.6 NC_002794.1 + 70307 0.66 0.753897
Target:  5'- ---cCGGGcGCGaaGAGCCGCuucgcCCGCGa -3'
miRNA:   3'- gguaGCCC-CGCa-CUCGGCGu----GGCGCa -5'
10721 5' -61.6 NC_002794.1 + 107101 0.66 0.753897
Target:  5'- ----gGGGGUGUGucGCUGCgaGCCGCGc -3'
miRNA:   3'- gguagCCCCGCACu-CGGCG--UGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 105483 0.66 0.744829
Target:  5'- gCCGUCGucuccGGuCGUgGAGCCGCcGCCGCc- -3'
miRNA:   3'- -GGUAGCc----CC-GCA-CUCGGCG-UGGCGca -5'
10721 5' -61.6 NC_002794.1 + 22940 0.66 0.744829
Target:  5'- cCCAUCGGcuGGCcgacGGGCCGgCGCCGUu- -3'
miRNA:   3'- -GGUAGCC--CCGca--CUCGGC-GUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 183179 0.66 0.744829
Target:  5'- cCgGUCGGGGaccGAGaCGCGCCGCc- -3'
miRNA:   3'- -GgUAGCCCCgcaCUCgGCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 190963 0.66 0.744829
Target:  5'- aCCAgcgccUCGGGGCagcaGAGCagGCAgCGCGg -3'
miRNA:   3'- -GGU-----AGCCCCGca--CUCGg-CGUgGCGCa -5'
10721 5' -61.6 NC_002794.1 + 17676 0.66 0.744829
Target:  5'- gCCGcCGGccccGGCGgagaccGAGCCGCACaCGCa- -3'
miRNA:   3'- -GGUaGCC----CCGCa-----CUCGGCGUG-GCGca -5'
10721 5' -61.6 NC_002794.1 + 111617 0.66 0.735673
Target:  5'- gCCggCGGGGCcgccgcGGCCGCcgccggucgggcGCCGCGg -3'
miRNA:   3'- -GGuaGCCCCGcac---UCGGCG------------UGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 46310 0.66 0.735673
Target:  5'- uCCGagcgCGGcGGCGacgGcGCCGuCGCCGCGg -3'
miRNA:   3'- -GGUa---GCC-CCGCa--CuCGGC-GUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 80415 0.66 0.726439
Target:  5'- cCCAgguggCGccGGGCG-GGGCCGCcGCCgGCGg -3'
miRNA:   3'- -GGUa----GC--CCCGCaCUCGGCG-UGG-CGCa -5'
10721 5' -61.6 NC_002794.1 + 112354 0.66 0.726439
Target:  5'- gCCGgcggCGGGGCGggGAGCUGCuggaacucgGCaCGCa- -3'
miRNA:   3'- -GGUa---GCCCCGCa-CUCGGCG---------UG-GCGca -5'
10721 5' -61.6 NC_002794.1 + 126686 0.67 0.707762
Target:  5'- cCCGaaUCGGGGaggGAGggGCGCCGCGg -3'
miRNA:   3'- -GGU--AGCCCCgcaCUCggCGUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 16928 0.67 0.707762
Target:  5'- aCUGUCGucGGCGccGAGCCGCcACCGCc- -3'
miRNA:   3'- -GGUAGCc-CCGCa-CUCGGCG-UGGCGca -5'
10721 5' -61.6 NC_002794.1 + 44270 0.67 0.698334
Target:  5'- gCCGcCGGGGaCGgagGAGuCCGCGCCcGCc- -3'
miRNA:   3'- -GGUaGCCCC-GCa--CUC-GGCGUGG-CGca -5'
10721 5' -61.6 NC_002794.1 + 121885 0.67 0.688858
Target:  5'- -aGUUGGGGUGgGuGCgGUACUGCGUc -3'
miRNA:   3'- ggUAGCCCCGCaCuCGgCGUGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.