miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10721 5' -61.6 NC_002794.1 + 162040 1.09 0.001408
Target:  5'- cCCAUCGGGGCGUGAGCCGCACCGCGUa -3'
miRNA:   3'- -GGUAGCCCCGCACUCGGCGUGGCGCA- -5'
10721 5' -61.6 NC_002794.1 + 119508 0.77 0.210927
Target:  5'- gUCGUCGGcGGCGcgGAGCCG-GCCGCGg -3'
miRNA:   3'- -GGUAGCC-CCGCa-CUCGGCgUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 23468 0.74 0.302294
Target:  5'- aCGUCGGGGCGgagGGGUcugccaugauCGCGCCGCc- -3'
miRNA:   3'- gGUAGCCCCGCa--CUCG----------GCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 105766 0.73 0.350957
Target:  5'- uUCAUCGGGGUcgGUGGGCCGCGUCGauaGg -3'
miRNA:   3'- -GGUAGCCCCG--CACUCGGCGUGGCg--Ca -5'
10721 5' -61.6 NC_002794.1 + 183866 0.73 0.358347
Target:  5'- gCCGUCGGGGCcaccGCCGaCACCGCc- -3'
miRNA:   3'- -GGUAGCCCCGcacuCGGC-GUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 115966 0.73 0.365846
Target:  5'- aCCGUgGGGGgGagcgggacgggGAGCgGCGCCGCGg -3'
miRNA:   3'- -GGUAgCCCCgCa----------CUCGgCGUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 183592 0.72 0.396905
Target:  5'- aCgGUgGGGGCGgagggGGGCCGCG-CGCGg -3'
miRNA:   3'- -GgUAgCCCCGCa----CUCGGCGUgGCGCa -5'
10721 5' -61.6 NC_002794.1 + 67426 0.72 0.40493
Target:  5'- gCGUCGGcGGCGU--GUCGCGCCGCu- -3'
miRNA:   3'- gGUAGCC-CCGCAcuCGGCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 133801 0.72 0.429609
Target:  5'- gCUGUUGGGGCGaucGGCCGCGaucuaCGCGUa -3'
miRNA:   3'- -GGUAGCCCCGCac-UCGGCGUg----GCGCA- -5'
10721 5' -61.6 NC_002794.1 + 99776 0.71 0.44569
Target:  5'- gCCcgCGGugccGGCGUcgacuacGAGCgCGCGCCGCGg -3'
miRNA:   3'- -GGuaGCC----CCGCA-------CUCG-GCGUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 95758 0.71 0.446545
Target:  5'- aCUcgCGGGGCGgcGGCCGCgACgGCGg -3'
miRNA:   3'- -GGuaGCCCCGCacUCGGCG-UGgCGCa -5'
10721 5' -61.6 NC_002794.1 + 48636 0.71 0.481492
Target:  5'- gCCGUCGGGGCccgcGAGCC--GCCGCa- -3'
miRNA:   3'- -GGUAGCCCCGca--CUCGGcgUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 38362 0.7 0.490436
Target:  5'- gCCGUU-GGGCGUGAGcCCGUagaaGCCGaCGUg -3'
miRNA:   3'- -GGUAGcCCCGCACUC-GGCG----UGGC-GCA- -5'
10721 5' -61.6 NC_002794.1 + 124409 0.7 0.499457
Target:  5'- gUCGUCGGGGC----GCCGUccGCCGCGg -3'
miRNA:   3'- -GGUAGCCCCGcacuCGGCG--UGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 111769 0.7 0.503086
Target:  5'- gCCGUCGGGGCGggcucguucgucagGAG-CGC-CCGCa- -3'
miRNA:   3'- -GGUAGCCCCGCa-------------CUCgGCGuGGCGca -5'
10721 5' -61.6 NC_002794.1 + 152107 0.7 0.50855
Target:  5'- gCCGUCuGGGGCuu--GCUGCGCCGCu- -3'
miRNA:   3'- -GGUAG-CCCCGcacuCGGCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 123738 0.7 0.50855
Target:  5'- cCCA-CcGGGCGUucccGAGCCGUGCCGCu- -3'
miRNA:   3'- -GGUaGcCCCGCA----CUCGGCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 149615 0.7 0.517713
Target:  5'- cCCGaCGGGGaCGUGGGaCGCGCgauaCGCGUg -3'
miRNA:   3'- -GGUaGCCCC-GCACUCgGCGUG----GCGCA- -5'
10721 5' -61.6 NC_002794.1 + 107051 0.7 0.526941
Target:  5'- gCGUCGGaGGCGgcgGGcGCgGCGCCGCc- -3'
miRNA:   3'- gGUAGCC-CCGCa--CU-CGgCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 90667 0.7 0.530649
Target:  5'- gCCGUUGGGGCc--GGCCGCGuggcuguucgugugcCCGCGg -3'
miRNA:   3'- -GGUAGCCCCGcacUCGGCGU---------------GGCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.