miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10721 5' -61.6 NC_002794.1 + 10766 0.68 0.621761
Target:  5'- aCGaCGGcGGCGUgGAGCUGCAgUGCGc -3'
miRNA:   3'- gGUaGCC-CCGCA-CUCGGCGUgGCGCa -5'
10721 5' -61.6 NC_002794.1 + 12224 0.68 0.612151
Target:  5'- gCGUCGGcGGCGccGGCgGCGCCGUc- -3'
miRNA:   3'- gGUAGCC-CCGCacUCGgCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 16077 0.68 0.621761
Target:  5'- aCCAUCGGGGuCGUGAG-CGUcaCGCu- -3'
miRNA:   3'- -GGUAGCCCC-GCACUCgGCGugGCGca -5'
10721 5' -61.6 NC_002794.1 + 16928 0.67 0.707762
Target:  5'- aCUGUCGucGGCGccGAGCCGCcACCGCc- -3'
miRNA:   3'- -GGUAGCc-CCGCa-CUCGGCG-UGGCGca -5'
10721 5' -61.6 NC_002794.1 + 17676 0.66 0.744829
Target:  5'- gCCGcCGGccccGGCGgagaccGAGCCGCACaCGCa- -3'
miRNA:   3'- -GGUaGCC----CCGCa-----CUCGGCGUG-GCGca -5'
10721 5' -61.6 NC_002794.1 + 22940 0.66 0.744829
Target:  5'- cCCAUCGGcuGGCcgacGGGCCGgCGCCGUu- -3'
miRNA:   3'- -GGUAGCC--CCGca--CUCGGC-GUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 23468 0.74 0.302294
Target:  5'- aCGUCGGGGCGgagGGGUcugccaugauCGCGCCGCc- -3'
miRNA:   3'- gGUAGCCCCGCa--CUCG----------GCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 33650 0.66 0.771741
Target:  5'- gCA-CGGGcGCGcUGAGCgUGCACuCGCGc -3'
miRNA:   3'- gGUaGCCC-CGC-ACUCG-GCGUG-GCGCa -5'
10721 5' -61.6 NC_002794.1 + 34852 0.67 0.669788
Target:  5'- gCGUCGGaGCG-GGcGCCGCgggcGCCGCGg -3'
miRNA:   3'- gGUAGCCcCGCaCU-CGGCG----UGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 38247 0.66 0.770858
Target:  5'- cCCGcagCGGGGCcuccugcGUGAGgCGCGgcccCCGCGc -3'
miRNA:   3'- -GGUa--GCCCCG-------CACUCgGCGU----GGCGCa -5'
10721 5' -61.6 NC_002794.1 + 38362 0.7 0.490436
Target:  5'- gCCGUU-GGGCGUGAGcCCGUagaaGCCGaCGUg -3'
miRNA:   3'- -GGUAGcCCCGCACUC-GGCG----UGGC-GCA- -5'
10721 5' -61.6 NC_002794.1 + 44270 0.67 0.698334
Target:  5'- gCCGcCGGGGaCGgagGAGuCCGCGCCcGCc- -3'
miRNA:   3'- -GGUaGCCCC-GCa--CUC-GGCGUGG-CGca -5'
10721 5' -61.6 NC_002794.1 + 44462 0.69 0.564415
Target:  5'- aCGUCGGcGGCG-GAGaCCGCcCCGuCGa -3'
miRNA:   3'- gGUAGCC-CCGCaCUC-GGCGuGGC-GCa -5'
10721 5' -61.6 NC_002794.1 + 46310 0.66 0.735673
Target:  5'- uCCGagcgCGGcGGCGacgGcGCCGuCGCCGCGg -3'
miRNA:   3'- -GGUa---GCC-CCGCa--CuCGGC-GUGGCGCa -5'
10721 5' -61.6 NC_002794.1 + 48636 0.71 0.481492
Target:  5'- gCCGUCGGGGCccgcGAGCC--GCCGCa- -3'
miRNA:   3'- -GGUAGCCCCGca--CUCGGcgUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 49400 0.66 0.761977
Target:  5'- gCCGUCGGccacggcggccgcGGCGgcgGcGGCCGuCACgGCGUc -3'
miRNA:   3'- -GGUAGCC-------------CCGCa--C-UCGGC-GUGgCGCA- -5'
10721 5' -61.6 NC_002794.1 + 53919 0.67 0.688858
Target:  5'- gCCGUCGGcGGCGccgccgaaccGAGCuCGCAgCCGCc- -3'
miRNA:   3'- -GGUAGCC-CCGCa---------CUCG-GCGU-GGCGca -5'
10721 5' -61.6 NC_002794.1 + 66851 0.67 0.669788
Target:  5'- gCCGUCGGcGCGgcgaGGCCGCGgCGUGc -3'
miRNA:   3'- -GGUAGCCcCGCac--UCGGCGUgGCGCa -5'
10721 5' -61.6 NC_002794.1 + 67426 0.72 0.40493
Target:  5'- gCGUCGGcGGCGU--GUCGCGCCGCu- -3'
miRNA:   3'- gGUAGCC-CCGCAcuCGGCGUGGCGca -5'
10721 5' -61.6 NC_002794.1 + 70307 0.66 0.753897
Target:  5'- ---cCGGGcGCGaaGAGCCGCuucgcCCGCGa -3'
miRNA:   3'- gguaGCCC-CGCa-CUCGGCGu----GGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.