miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10722 3' -52.9 NC_002794.1 + 72442 0.66 0.989249
Target:  5'- cGGAGGGAcCGGcgGcgCCCCGCGCc--- -3'
miRNA:   3'- aCCUCUCU-GCU--UuaGGGGUGUGcuca -5'
10722 3' -52.9 NC_002794.1 + 101595 0.66 0.98625
Target:  5'- cGGGGGGGCGGGugccggcCCgCCGgGCGGGg -3'
miRNA:   3'- aCCUCUCUGCUUua-----GG-GGUgUGCUCa -5'
10722 3' -52.9 NC_002794.1 + 163827 0.66 0.98625
Target:  5'- gUGGAGAugGACGAuGUCCgaCCGCGCuggcuuGAGUu -3'
miRNA:   3'- -ACCUCU--CUGCUuUAGG--GGUGUG------CUCA- -5'
10722 3' -52.9 NC_002794.1 + 183476 0.66 0.984528
Target:  5'- cGcGAGuccGCGGcccGAUCCCCGCGCGAa- -3'
miRNA:   3'- aC-CUCuc-UGCU---UUAGGGGUGUGCUca -5'
10722 3' -52.9 NC_002794.1 + 38263 0.66 0.982647
Target:  5'- cUGcGuGAGGCGcgGcCCCCGCGCGAcGUa -3'
miRNA:   3'- -AC-CuCUCUGCuuUaGGGGUGUGCU-CA- -5'
10722 3' -52.9 NC_002794.1 + 181457 0.66 0.982647
Target:  5'- cGGAG-GACGucuuaCCCGCGcCGAGUc -3'
miRNA:   3'- aCCUCuCUGCuuuagGGGUGU-GCUCA- -5'
10722 3' -52.9 NC_002794.1 + 149503 0.67 0.980599
Target:  5'- aUGGGGAugguGACGggGUCgUCGC-CGGGa -3'
miRNA:   3'- -ACCUCU----CUGCuuUAGgGGUGuGCUCa -5'
10722 3' -52.9 NC_002794.1 + 136926 0.67 0.980599
Target:  5'- gGGAGccccgaguuGACGGcgccgagauAGUCCCCGCAgGGGa -3'
miRNA:   3'- aCCUCu--------CUGCU---------UUAGGGGUGUgCUCa -5'
10722 3' -52.9 NC_002794.1 + 178812 0.67 0.980385
Target:  5'- cGGGGGGAcCGGgcacucgGGUCUCC-CGCGGGUc -3'
miRNA:   3'- aCCUCUCU-GCU-------UUAGGGGuGUGCUCA- -5'
10722 3' -52.9 NC_002794.1 + 179066 0.67 0.973373
Target:  5'- gGGuucuGGGACGAGGgaccagaaCCCCGCcCGAGg -3'
miRNA:   3'- aCCu---CUCUGCUUUa-------GGGGUGuGCUCa -5'
10722 3' -52.9 NC_002794.1 + 175933 0.67 0.973373
Target:  5'- cGGAGAuGACGugGUUUCCugcCGCGAGa -3'
miRNA:   3'- aCCUCU-CUGCuuUAGGGGu--GUGCUCa -5'
10722 3' -52.9 NC_002794.1 + 17861 0.67 0.970579
Target:  5'- cGGAGAuGCGGacGAUCCUCACGCuGGc -3'
miRNA:   3'- aCCUCUcUGCU--UUAGGGGUGUGcUCa -5'
10722 3' -52.9 NC_002794.1 + 130010 0.67 0.970579
Target:  5'- cGGAGcGuGCGGGucggCCUCGCGCGAGg -3'
miRNA:   3'- aCCUCuC-UGCUUua--GGGGUGUGCUCa -5'
10722 3' -52.9 NC_002794.1 + 185224 0.67 0.970579
Target:  5'- cGGAGAGucgcgcCGAccgCCgCGCACGAGa -3'
miRNA:   3'- aCCUCUCu-----GCUuuaGGgGUGUGCUCa -5'
10722 3' -52.9 NC_002794.1 + 17687 0.68 0.965681
Target:  5'- cGGcGGAGAcCGAGccgcacacgcaguacAUCCCCACGcCGAGc -3'
miRNA:   3'- aCC-UCUCU-GCUU---------------UAGGGGUGU-GCUCa -5'
10722 3' -52.9 NC_002794.1 + 69763 0.68 0.964373
Target:  5'- cGGGGAuGGCGAcgaaGAUCCCgACgagccACGAGa -3'
miRNA:   3'- aCCUCU-CUGCU----UUAGGGgUG-----UGCUCa -5'
10722 3' -52.9 NC_002794.1 + 137527 0.68 0.964373
Target:  5'- gUGGAugaccGAGACGGAGUCUUCggGCGCGAa- -3'
miRNA:   3'- -ACCU-----CUCUGCUUUAGGGG--UGUGCUca -5'
10722 3' -52.9 NC_002794.1 + 13100 0.68 0.960948
Target:  5'- gGGGGAcgaggugcguucGGCGggGUCgCCGCGCGGc- -3'
miRNA:   3'- aCCUCU------------CUGCuuUAGgGGUGUGCUca -5'
10722 3' -52.9 NC_002794.1 + 146763 0.68 0.960594
Target:  5'- gGGAGGGACGAuggucgcAAUaaaagccgugacCCCCGCAcuCGGGUc -3'
miRNA:   3'- aCCUCUCUGCU-------UUA------------GGGGUGU--GCUCA- -5'
10722 3' -52.9 NC_002794.1 + 158422 0.68 0.953432
Target:  5'- gUGGAG-GACGAAcgCaCgCCAgGCGGGUu -3'
miRNA:   3'- -ACCUCuCUGCUUuaG-G-GGUgUGCUCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.