Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10722 | 3' | -52.9 | NC_002794.1 | + | 159377 | 1.08 | 0.008234 |
Target: 5'- gUGGAGAGACGAAAUCCCCACACGAGUg -3' miRNA: 3'- -ACCUCUCUGCUUUAGGGGUGUGCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 155946 | 0.73 | 0.773389 |
Target: 5'- cGGGGcucuuCGccGUCCCCACACGAGUc -3' miRNA: 3'- aCCUCucu--GCuuUAGGGGUGUGCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 135654 | 0.72 | 0.835488 |
Target: 5'- cGGAGGGugGGGggguGUCCuCCACgACGGGc -3' miRNA: 3'- aCCUCUCugCUU----UAGG-GGUG-UGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 79459 | 0.7 | 0.901093 |
Target: 5'- cGGAGAcGACGAcgccgccAGUCgCCAC-CGAGUu -3' miRNA: 3'- aCCUCU-CUGCU-------UUAGgGGUGuGCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 83054 | 0.7 | 0.919752 |
Target: 5'- cGGAG-GACGAGcgCCCaCcCACGGGc -3' miRNA: 3'- aCCUCuCUGCUUuaGGG-GuGUGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 40311 | 0.69 | 0.939956 |
Target: 5'- aGGAGGGACGGuuuUCCucacccgCCGCGCGGa- -3' miRNA: 3'- aCCUCUCUGCUuu-AGG-------GGUGUGCUca -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 158422 | 0.68 | 0.953432 |
Target: 5'- gUGGAG-GACGAAcgCaCgCCAgGCGGGUu -3' miRNA: 3'- -ACCUCuCUGCUUuaG-G-GGUgUGCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 146763 | 0.68 | 0.960594 |
Target: 5'- gGGAGGGACGAuggucgcAAUaaaagccgugacCCCCGCAcuCGGGUc -3' miRNA: 3'- aCCUCUCUGCU-------UUA------------GGGGUGU--GCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 13100 | 0.68 | 0.960948 |
Target: 5'- gGGGGAcgaggugcguucGGCGggGUCgCCGCGCGGc- -3' miRNA: 3'- aCCUCU------------CUGCuuUAGgGGUGUGCUca -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 137527 | 0.68 | 0.964373 |
Target: 5'- gUGGAugaccGAGACGGAGUCUUCggGCGCGAa- -3' miRNA: 3'- -ACCU-----CUCUGCUUUAGGGG--UGUGCUca -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 69763 | 0.68 | 0.964373 |
Target: 5'- cGGGGAuGGCGAcgaaGAUCCCgACgagccACGAGa -3' miRNA: 3'- aCCUCU-CUGCU----UUAGGGgUG-----UGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 17687 | 0.68 | 0.965681 |
Target: 5'- cGGcGGAGAcCGAGccgcacacgcaguacAUCCCCACGcCGAGc -3' miRNA: 3'- aCC-UCUCU-GCUU---------------UAGGGGUGU-GCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 185224 | 0.67 | 0.970579 |
Target: 5'- cGGAGAGucgcgcCGAccgCCgCGCACGAGa -3' miRNA: 3'- aCCUCUCu-----GCUuuaGGgGUGUGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 17861 | 0.67 | 0.970579 |
Target: 5'- cGGAGAuGCGGacGAUCCUCACGCuGGc -3' miRNA: 3'- aCCUCUcUGCU--UUAGGGGUGUGcUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 130010 | 0.67 | 0.970579 |
Target: 5'- cGGAGcGuGCGGGucggCCUCGCGCGAGg -3' miRNA: 3'- aCCUCuC-UGCUUua--GGGGUGUGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 175933 | 0.67 | 0.973373 |
Target: 5'- cGGAGAuGACGugGUUUCCugcCGCGAGa -3' miRNA: 3'- aCCUCU-CUGCuuUAGGGGu--GUGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 179066 | 0.67 | 0.973373 |
Target: 5'- gGGuucuGGGACGAGGgaccagaaCCCCGCcCGAGg -3' miRNA: 3'- aCCu---CUCUGCUUUa-------GGGGUGuGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 178812 | 0.67 | 0.980385 |
Target: 5'- cGGGGGGAcCGGgcacucgGGUCUCC-CGCGGGUc -3' miRNA: 3'- aCCUCUCU-GCU-------UUAGGGGuGUGCUCA- -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 149503 | 0.67 | 0.980599 |
Target: 5'- aUGGGGAugguGACGggGUCgUCGC-CGGGa -3' miRNA: 3'- -ACCUCU----CUGCuuUAGgGGUGuGCUCa -5' |
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10722 | 3' | -52.9 | NC_002794.1 | + | 136926 | 0.67 | 0.980599 |
Target: 5'- gGGAGccccgaguuGACGGcgccgagauAGUCCCCGCAgGGGa -3' miRNA: 3'- aCCUCu--------CUGCU---------UUAGGGGUGUgCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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