miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10722 5' -57.4 NC_002794.1 + 24057 0.66 0.89794
Target:  5'- -cGCCCGcCCcGGacCACACCCgUGCg -3'
miRNA:   3'- uuUGGGCaGGuCCaaGUGUGGGgGUG- -5'
10722 5' -57.4 NC_002794.1 + 183669 0.66 0.89794
Target:  5'- cGGGCCCGagcgCCgacGGGUcgaGCGCCCgCCGCg -3'
miRNA:   3'- -UUUGGGCa---GG---UCCAag-UGUGGG-GGUG- -5'
10722 5' -57.4 NC_002794.1 + 125400 0.66 0.891449
Target:  5'- cGAGCCCGUCgAGGcgC-CGCCCaagaaagCGCa -3'
miRNA:   3'- -UUUGGGCAGgUCCaaGuGUGGGg------GUG- -5'
10722 5' -57.4 NC_002794.1 + 2489 0.66 0.891449
Target:  5'- cGAUCCGguggCCGGGgucCAgACCCCCu- -3'
miRNA:   3'- uUUGGGCa---GGUCCaa-GUgUGGGGGug -5'
10722 5' -57.4 NC_002794.1 + 112723 0.66 0.891449
Target:  5'- -uGCCCGUCCAGGacgcggaaggCGCGgugCUCCGCg -3'
miRNA:   3'- uuUGGGCAGGUCCaa--------GUGUg--GGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 36348 0.66 0.888791
Target:  5'- cAACCCGgcgugcgcggccaCCGGGUgCGCGCCCgCgGCg -3'
miRNA:   3'- uUUGGGCa------------GGUCCAaGUGUGGG-GgUG- -5'
10722 5' -57.4 NC_002794.1 + 191425 0.66 0.884054
Target:  5'- -cACCCGacCCGGGUccggcucUCACACCggacgggaacaaCCCGCu -3'
miRNA:   3'- uuUGGGCa-GGUCCA-------AGUGUGG------------GGGUG- -5'
10722 5' -57.4 NC_002794.1 + 67307 0.66 0.877808
Target:  5'- cGACCCaggUCGGG-UCGCGCCCgUACa -3'
miRNA:   3'- uUUGGGca-GGUCCaAGUGUGGGgGUG- -5'
10722 5' -57.4 NC_002794.1 + 80362 0.66 0.877808
Target:  5'- uAAGCgCGUCCGGGccCAgggccuCACCCgCCGCg -3'
miRNA:   3'- -UUUGgGCAGGUCCaaGU------GUGGG-GGUG- -5'
10722 5' -57.4 NC_002794.1 + 195588 0.66 0.863318
Target:  5'- -cGCCgGaCCGGccgaCGCGCCCCCGCg -3'
miRNA:   3'- uuUGGgCaGGUCcaa-GUGUGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 109551 0.67 0.855768
Target:  5'- cGGACCgGUCUAcc-UCGC-CCCCCACg -3'
miRNA:   3'- -UUUGGgCAGGUccaAGUGuGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 192289 0.67 0.855768
Target:  5'- cGACCCGgagaCCAGcUUCGCGCUcgUCCGCg -3'
miRNA:   3'- uUUGGGCa---GGUCcAAGUGUGG--GGGUG- -5'
10722 5' -57.4 NC_002794.1 + 41831 0.67 0.848021
Target:  5'- cAGGCCCGUggUCGGGUcgaUCAgCAgCCCCAg -3'
miRNA:   3'- -UUUGGGCA--GGUCCA---AGU-GUgGGGGUg -5'
10722 5' -57.4 NC_002794.1 + 183175 0.67 0.848021
Target:  5'- cGAGCCgGUCgGGGaccgagaCGCGCCgCCACg -3'
miRNA:   3'- -UUUGGgCAGgUCCaa-----GUGUGGgGGUG- -5'
10722 5' -57.4 NC_002794.1 + 1132 0.67 0.823668
Target:  5'- --uCCCcUUCAGGUcCACGCgCCCACc -3'
miRNA:   3'- uuuGGGcAGGUCCAaGUGUGgGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 77205 0.67 0.823668
Target:  5'- -cGCCCGUCgCAGGU--GCGCUUgCACa -3'
miRNA:   3'- uuUGGGCAG-GUCCAagUGUGGGgGUG- -5'
10722 5' -57.4 NC_002794.1 + 185938 0.67 0.815203
Target:  5'- -cACCCG-CCAGGcUCGCGgCCgCGCc -3'
miRNA:   3'- uuUGGGCaGGUCCaAGUGUgGGgGUG- -5'
10722 5' -57.4 NC_002794.1 + 190642 0.67 0.815203
Target:  5'- uAGCCCGgcgugugCAGGaucacgUCGCGCCCgCCGCg -3'
miRNA:   3'- uUUGGGCag-----GUCCa-----AGUGUGGG-GGUG- -5'
10722 5' -57.4 NC_002794.1 + 30115 0.68 0.806577
Target:  5'- ---aCCGcCCGGGUUUucuccuCACCCCCGu -3'
miRNA:   3'- uuugGGCaGGUCCAAGu-----GUGGGGGUg -5'
10722 5' -57.4 NC_002794.1 + 136 0.68 0.806577
Target:  5'- gGAGCCCGggaccgCCgcAGGggCGCACCagcacgCCCGCg -3'
miRNA:   3'- -UUUGGGCa-----GG--UCCaaGUGUGG------GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.