miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10722 5' -57.4 NC_002794.1 + 159421 1.08 0.003096
Target:  5'- aAAACCCGUCCAGGUUCACACCCCCACa -3'
miRNA:   3'- -UUUGGGCAGGUCCAAGUGUGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 109759 0.73 0.495314
Target:  5'- cAGCCCGUC--GGUUCACACgCCCCu- -3'
miRNA:   3'- uUUGGGCAGguCCAAGUGUG-GGGGug -5'
10722 5' -57.4 NC_002794.1 + 3788 0.72 0.573161
Target:  5'- gGAGCCCuucugauugGUCCGGG-UCGgugccaacCGCCCCCGCa -3'
miRNA:   3'- -UUUGGG---------CAGGUCCaAGU--------GUGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 35816 0.71 0.603175
Target:  5'- cGGACCCGguuUCCGGGccgccgcCACgaACCCCCGCg -3'
miRNA:   3'- -UUUGGGC---AGGUCCaa-----GUG--UGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 17057 0.71 0.6233
Target:  5'- cGACCUGUCCGGGcgUACcgaccuucACCCUCACu -3'
miRNA:   3'- uUUGGGCAGGUCCaaGUG--------UGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 8708 0.71 0.64345
Target:  5'- -cACCCugccCCGGGUcCACACCCCC-Ca -3'
miRNA:   3'- uuUGGGca--GGUCCAaGUGUGGGGGuG- -5'
10722 5' -57.4 NC_002794.1 + 61276 0.71 0.64345
Target:  5'- -cGCCCGUacgagCAGGUcCGCGCCgCCACc -3'
miRNA:   3'- uuUGGGCAg----GUCCAaGUGUGGgGGUG- -5'
10722 5' -57.4 NC_002794.1 + 50805 0.71 0.64345
Target:  5'- -cGCCCGgcgUCGGGcgCuccgGCGCCCCCGCc -3'
miRNA:   3'- uuUGGGCa--GGUCCaaG----UGUGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 124638 0.7 0.663566
Target:  5'- -cGCCCG-CCAuGGUgcugcagacggUGCGCCCCCACu -3'
miRNA:   3'- uuUGGGCaGGU-CCAa----------GUGUGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 57478 0.7 0.683583
Target:  5'- -cGCUCGUcacgcgcgaCCAGGUgcgCGCGCCCgCCGCc -3'
miRNA:   3'- uuUGGGCA---------GGUCCAa--GUGUGGG-GGUG- -5'
10722 5' -57.4 NC_002794.1 + 142836 0.7 0.683583
Target:  5'- -uGCgCGUUCAGGUUCAgGgccUCCCCGCu -3'
miRNA:   3'- uuUGgGCAGGUCCAAGUgU---GGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 116330 0.7 0.693534
Target:  5'- -cACCuCGUCCAGcuGUUCGCACUCgUACa -3'
miRNA:   3'- uuUGG-GCAGGUC--CAAGUGUGGGgGUG- -5'
10722 5' -57.4 NC_002794.1 + 51397 0.69 0.713278
Target:  5'- -cGCCC-UCCGGGcucaccgCGCACCCCC-Cg -3'
miRNA:   3'- uuUGGGcAGGUCCaa-----GUGUGGGGGuG- -5'
10722 5' -57.4 NC_002794.1 + 141896 0.69 0.713278
Target:  5'- --uCCCGUCCAGGcgaCGCGCCguuCUCGCg -3'
miRNA:   3'- uuuGGGCAGGUCCaa-GUGUGG---GGGUG- -5'
10722 5' -57.4 NC_002794.1 + 43537 0.69 0.751893
Target:  5'- cGAGCCCGUCCAcGUUC-CAgCCCUu- -3'
miRNA:   3'- -UUUGGGCAGGUcCAAGuGUgGGGGug -5'
10722 5' -57.4 NC_002794.1 + 45379 0.68 0.760376
Target:  5'- cGAGCCCGUCggccacaCGGGcaccUCGCgcucgugaaaucGCCCCCGCa -3'
miRNA:   3'- -UUUGGGCAG-------GUCCa---AGUG------------UGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 42524 0.68 0.770623
Target:  5'- aGAGCCCGagggaggCCcGGUcCGaaaGCCCCCACa -3'
miRNA:   3'- -UUUGGGCa------GGuCCAaGUg--UGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 153735 0.68 0.770623
Target:  5'- cGAgCCGaCCGGGUUCcCACUCuCCGCa -3'
miRNA:   3'- uUUgGGCaGGUCCAAGuGUGGG-GGUG- -5'
10722 5' -57.4 NC_002794.1 + 146493 0.68 0.770623
Target:  5'- gGAGCCCGUCgAGc-UCGCggaGCCCCUGCu -3'
miRNA:   3'- -UUUGGGCAGgUCcaAGUG---UGGGGGUG- -5'
10722 5' -57.4 NC_002794.1 + 45016 0.68 0.779812
Target:  5'- cAGACUCGUggCCGGGUgcucCGCACCCagCGCg -3'
miRNA:   3'- -UUUGGGCA--GGUCCAa---GUGUGGGg-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.