miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 3' -56.3 NC_002794.1 + 154352 0.66 0.951282
Target:  5'- ---gGCCGAGCucccgcGCGGUCCaggccgcggcggCGGCGgGCa -3'
miRNA:   3'- guagUGGCUCG------UGCUAGG------------GCUGCgCG- -5'
10723 3' -56.3 NC_002794.1 + 60010 0.66 0.951282
Target:  5'- --gCGCCGAGCGCaccGAccugCUCGACGC-Cg -3'
miRNA:   3'- guaGUGGCUCGUG---CUa---GGGCUGCGcG- -5'
10723 3' -56.3 NC_002794.1 + 57212 0.66 0.951282
Target:  5'- --cCACCu-GCACcgccaGAgCCUGACGCGCg -3'
miRNA:   3'- guaGUGGcuCGUG-----CUaGGGCUGCGCG- -5'
10723 3' -56.3 NC_002794.1 + 49591 0.66 0.951282
Target:  5'- gAUC-CCGAuCGCGAUCggcgaCGGCGgGCg -3'
miRNA:   3'- gUAGuGGCUcGUGCUAGg----GCUGCgCG- -5'
10723 3' -56.3 NC_002794.1 + 123507 0.66 0.951282
Target:  5'- gCAUCGCCGGGCugccggccugcaGCuGGUUCgGgcacACGCGCu -3'
miRNA:   3'- -GUAGUGGCUCG------------UG-CUAGGgC----UGCGCG- -5'
10723 3' -56.3 NC_002794.1 + 81612 0.66 0.951282
Target:  5'- aGUCGCggaCGAGCACGcGUUCCGcagcuuccUGCGCa -3'
miRNA:   3'- gUAGUG---GCUCGUGC-UAGGGCu-------GCGCG- -5'
10723 3' -56.3 NC_002794.1 + 94272 0.66 0.951282
Target:  5'- uCAUUugCGcGGCGCGG-CCCGA-GCGg -3'
miRNA:   3'- -GUAGugGC-UCGUGCUaGGGCUgCGCg -5'
10723 3' -56.3 NC_002794.1 + 137364 0.66 0.951282
Target:  5'- gGUCuucuUCGAGCcggGCGAgCgCCGACGCGg -3'
miRNA:   3'- gUAGu---GGCUCG---UGCUaG-GGCUGCGCg -5'
10723 3' -56.3 NC_002794.1 + 130555 0.66 0.951282
Target:  5'- gCGUCGCCGcGCACGuguuggcgagGUCUCGAgcaaguCGgGCa -3'
miRNA:   3'- -GUAGUGGCuCGUGC----------UAGGGCU------GCgCG- -5'
10723 3' -56.3 NC_002794.1 + 144028 0.66 0.951282
Target:  5'- ---aGCCGAGC-CGuAUCuCCGGCGCc- -3'
miRNA:   3'- guagUGGCUCGuGC-UAG-GGCUGCGcg -5'
10723 3' -56.3 NC_002794.1 + 192148 0.66 0.951282
Target:  5'- ---uGCCG-GCGCGGUCgCGGCGgaGCc -3'
miRNA:   3'- guagUGGCuCGUGCUAGgGCUGCg-CG- -5'
10723 3' -56.3 NC_002794.1 + 151707 0.66 0.951282
Target:  5'- ---gGCCGAGCGCG--CCaGuCGCGCg -3'
miRNA:   3'- guagUGGCUCGUGCuaGGgCuGCGCG- -5'
10723 3' -56.3 NC_002794.1 + 602 0.66 0.950884
Target:  5'- uCGUgGCCGGGUGCGGUcaggcggCCCgguGugGCGUu -3'
miRNA:   3'- -GUAgUGGCUCGUGCUA-------GGG---CugCGCG- -5'
10723 3' -56.3 NC_002794.1 + 84461 0.66 0.95008
Target:  5'- --cCGCCGAaaGCGCcGUCUccggccuuuacguuCGACGCGCu -3'
miRNA:   3'- guaGUGGCU--CGUGcUAGG--------------GCUGCGCG- -5'
10723 3' -56.3 NC_002794.1 + 186270 0.66 0.948858
Target:  5'- gAUCACCGccuggcgcggcGGCAccgcggccaggcggcCGGUCgCCGcgGCGCGCu -3'
miRNA:   3'- gUAGUGGC-----------UCGU---------------GCUAG-GGC--UGCGCG- -5'
10723 3' -56.3 NC_002794.1 + 151748 0.66 0.947197
Target:  5'- gGUCGCCucGCGCGcucGUCCuCGAgauggagacCGCGCc -3'
miRNA:   3'- gUAGUGGcuCGUGC---UAGG-GCU---------GCGCG- -5'
10723 3' -56.3 NC_002794.1 + 189798 0.66 0.947197
Target:  5'- aAUCGCCGu---CGAacCCCGGCGgGCg -3'
miRNA:   3'- gUAGUGGCucguGCUa-GGGCUGCgCG- -5'
10723 3' -56.3 NC_002794.1 + 48601 0.66 0.947197
Target:  5'- gCGUCGCCGucGGCGuCGG-CCUcaGACGCGg -3'
miRNA:   3'- -GUAGUGGC--UCGU-GCUaGGG--CUGCGCg -5'
10723 3' -56.3 NC_002794.1 + 187021 0.66 0.947197
Target:  5'- gCGUCAgCGGGUGcCGAUacaCCGGCuCGCa -3'
miRNA:   3'- -GUAGUgGCUCGU-GCUAg--GGCUGcGCG- -5'
10723 3' -56.3 NC_002794.1 + 110166 0.66 0.947197
Target:  5'- uCGUCGCgGGGCAUGAggCUCGAgaUGgGCc -3'
miRNA:   3'- -GUAGUGgCUCGUGCUa-GGGCU--GCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.