miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 5' -56.5 NC_002794.1 + 159511 0.66 0.941505
Target:  5'- cGGCGUGggucgaaucauaUACCGACAUCaacggacuaGUGACGa-- -3'
miRNA:   3'- aCCGCAC------------GUGGCUGUAG---------CACUGCcac -5'
10723 5' -56.5 NC_002794.1 + 137622 0.66 0.941505
Target:  5'- cGGCgGUGCccacgaCGACGUCcUGGCGGg- -3'
miRNA:   3'- aCCG-CACGug----GCUGUAGcACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 100676 0.66 0.941505
Target:  5'- gGGCGcuacGCGcCCGAguUCGUGACcGGg- -3'
miRNA:   3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5'
10723 5' -56.5 NC_002794.1 + 67210 0.66 0.941505
Target:  5'- gGGCgGUGCGCuCGGCGcCG-GGCGGc- -3'
miRNA:   3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 167237 0.66 0.941053
Target:  5'- cGG-GUGCACCGGaa-CGUGACuuuuucguaaucuGGUGg -3'
miRNA:   3'- aCCgCACGUGGCUguaGCACUG-------------CCAC- -5'
10723 5' -56.5 NC_002794.1 + 14597 0.66 0.936882
Target:  5'- gUGGCGagcGCGCCgGGCAcCGcGACGGg- -3'
miRNA:   3'- -ACCGCa--CGUGG-CUGUaGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 89965 0.66 0.936882
Target:  5'- aGGCGUucggaccgugguGCGCCGGCGUUc-GAcCGGUGc -3'
miRNA:   3'- aCCGCA------------CGUGGCUGUAGcaCU-GCCAC- -5'
10723 5' -56.5 NC_002794.1 + 154385 0.66 0.936882
Target:  5'- cGGCGgGCAcgcCCGuucGCGUgGUGcCGGUGg -3'
miRNA:   3'- aCCGCaCGU---GGC---UGUAgCACuGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 136717 0.66 0.936882
Target:  5'- aGGCGccgGUcCCGGCGUCcaGGCGGUc -3'
miRNA:   3'- aCCGCa--CGuGGCUGUAGcaCUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 116382 0.66 0.932032
Target:  5'- gUGGCGUGCGggUCGAagacgaaggUGUGGCGGg- -3'
miRNA:   3'- -ACCGCACGU--GGCUgua------GCACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 82048 0.66 0.932032
Target:  5'- cGGCGgcgGCGgCGGCGUCGUccuCGGc- -3'
miRNA:   3'- aCCGCa--CGUgGCUGUAGCAcu-GCCac -5'
10723 5' -56.5 NC_002794.1 + 18914 0.66 0.932032
Target:  5'- cGGCGcccggacugGCGCUGGaucgguUCGUGACGGa- -3'
miRNA:   3'- aCCGCa--------CGUGGCUgu----AGCACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 146616 0.66 0.932032
Target:  5'- aGGCG-GCGagGACGUCGaaGGCGGUa -3'
miRNA:   3'- aCCGCaCGUggCUGUAGCa-CUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 126286 0.66 0.932032
Target:  5'- gGGCuugcuGUGCGCCG-CG-CGccUGGCGGUGc -3'
miRNA:   3'- aCCG-----CACGUGGCuGUaGC--ACUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 21460 0.66 0.926955
Target:  5'- cGGCGU-CGCCGugA-CGgcaACGGUGg -3'
miRNA:   3'- aCCGCAcGUGGCugUaGCac-UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 32307 0.66 0.926955
Target:  5'- cGGCGgccGCGCCGGCcgCG-GcCGGa- -3'
miRNA:   3'- aCCGCa--CGUGGCUGuaGCaCuGCCac -5'
10723 5' -56.5 NC_002794.1 + 14663 0.66 0.926955
Target:  5'- cGGCGUcGguCCGAC-UCGcGGCGGc- -3'
miRNA:   3'- aCCGCA-CguGGCUGuAGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 113732 0.66 0.925912
Target:  5'- cGGCGacUGCACCGACcggaccaggcgCGcGAgGGUGu -3'
miRNA:   3'- aCCGC--ACGUGGCUGua---------GCaCUgCCAC- -5'
10723 5' -56.5 NC_002794.1 + 544 0.66 0.92165
Target:  5'- uUGGCaucuUGC-CCGGCcUCGgcgcGGCGGUGg -3'
miRNA:   3'- -ACCGc---ACGuGGCUGuAGCa---CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 102335 0.66 0.92165
Target:  5'- aGGCGUGgACCuggugcgcaaGACGgcgugccgcuUCGUgaaGACGGUGg -3'
miRNA:   3'- aCCGCACgUGG----------CUGU----------AGCA---CUGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.