miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 5' -56.5 NC_002794.1 + 157687 1.09 0.003752
Target:  5'- uUGGCGUGCACCGACAUCGUGACGGUGa -3'
miRNA:   3'- -ACCGCACGUGGCUGUAGCACUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 141312 0.81 0.234533
Target:  5'- cGGCGacgGCACCGGCGUCGgcuCGGUGg -3'
miRNA:   3'- aCCGCa--CGUGGCUGUAGCacuGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 138955 0.79 0.309436
Target:  5'- gUGGCGUGCugCGACG-CGgcgGACGGg- -3'
miRNA:   3'- -ACCGCACGugGCUGUaGCa--CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 102158 0.74 0.556859
Target:  5'- cGGCGUGCgcGCCGGggcCAUCGUGGCGc-- -3'
miRNA:   3'- aCCGCACG--UGGCU---GUAGCACUGCcac -5'
10723 5' -56.5 NC_002794.1 + 145737 0.74 0.556859
Target:  5'- aGGCGgcgGCGCCGGCAUC--GACGGc- -3'
miRNA:   3'- aCCGCa--CGUGGCUGUAGcaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 112347 0.73 0.576542
Target:  5'- cGGCG-GCGCCGGCggCGgGGCGGg- -3'
miRNA:   3'- aCCGCaCGUGGCUGuaGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 142490 0.73 0.586442
Target:  5'- cGuGCG-GCGCCGGCAgcgaCGUGGCGGa- -3'
miRNA:   3'- aC-CGCaCGUGGCUGUa---GCACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 65968 0.73 0.616307
Target:  5'- cGGCGUcuccuccgGCACCaACGUCGaacugGGCGGUGa -3'
miRNA:   3'- aCCGCA--------CGUGGcUGUAGCa----CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 55298 0.72 0.626294
Target:  5'- gGGCG-GCGgCGGCGUCGcGGCGGg- -3'
miRNA:   3'- aCCGCaCGUgGCUGUAGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 4199 0.71 0.68604
Target:  5'- aGGCGaUGCugUGACGUUGcaUGAcCGGUGu -3'
miRNA:   3'- aCCGC-ACGugGCUGUAGC--ACU-GCCAC- -5'
10723 5' -56.5 NC_002794.1 + 118271 0.71 0.68604
Target:  5'- gGGCGgcgGCGCCGGCGUCGggGACc--- -3'
miRNA:   3'- aCCGCa--CGUGGCUGUAGCa-CUGccac -5'
10723 5' -56.5 NC_002794.1 + 106997 0.71 0.68604
Target:  5'- gUGGCG-GCGCUGGCcgaCGcGACGGUGc -3'
miRNA:   3'- -ACCGCaCGUGGCUGua-GCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 122899 0.71 0.705701
Target:  5'- cGaGCGcacggGCGCCGAguUCGcGACGGUGu -3'
miRNA:   3'- aC-CGCa----CGUGGCUguAGCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 107535 0.7 0.734727
Target:  5'- cGGCGcgGCGCCGGCggCGacgaccGCGGUGg -3'
miRNA:   3'- aCCGCa-CGUGGCUGuaGCac----UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 65929 0.7 0.734727
Target:  5'- cGGCG-GCGgUGGCGUCGgcGGCGGUa -3'
miRNA:   3'- aCCGCaCGUgGCUGUAGCa-CUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 9340 0.7 0.753667
Target:  5'- gGuGCGUGCGCCGGCAc---GACGGUc -3'
miRNA:   3'- aC-CGCACGUGGCUGUagcaCUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 140106 0.7 0.753667
Target:  5'- cGGCG-GCgAUCGACggCGgucGACGGUGg -3'
miRNA:   3'- aCCGCaCG-UGGCUGuaGCa--CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 56103 0.7 0.762988
Target:  5'- cGuGCGUGCugCGcuggccCGUCaUGACGGUGa -3'
miRNA:   3'- aC-CGCACGugGCu-----GUAGcACUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 125690 0.7 0.762988
Target:  5'- gGGCGacgUGUugCuGCG-CGUGACGGUGg -3'
miRNA:   3'- aCCGC---ACGugGcUGUaGCACUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 126609 0.69 0.790254
Target:  5'- aGGcCG-GCGCCGACGUCGcGGC-GUGa -3'
miRNA:   3'- aCC-GCaCGUGGCUGUAGCaCUGcCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.