miRNA: 3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5'
miRNA: 3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5'
miRNA: 3'- aCCG-CACGug----GCUGUAGcACUGCCac -5'
miRNA: 3'- aCCGCAC------------GUGGCUGUAG---------CACUGCcac -5'
Results 61 - 64 of 64 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10723 | 5' | -56.5 | NC_002794.1 | + | 67210 | 0.66 | 0.941505 |
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Target: 5'- gGGCgGUGCGCuCGGCGcCG-GGCGGc- -3' miRNA: 3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5' |
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| 10723 | 5' | -56.5 | NC_002794.1 | + | 100676 | 0.66 | 0.941505 |
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Target: 5'- gGGCGcuacGCGcCCGAguUCGUGACcGGg- -3' miRNA: 3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5' |
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| 10723 | 5' | -56.5 | NC_002794.1 | + | 137622 | 0.66 | 0.941505 |
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Target: 5'- cGGCgGUGCccacgaCGACGUCcUGGCGGg- -3' miRNA: 3'- aCCG-CACGug----GCUGUAGcACUGCCac -5' |
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| 10723 | 5' | -56.5 | NC_002794.1 | + | 159511 | 0.66 | 0.941505 |
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Target: 5'- cGGCGUGggucgaaucauaUACCGACAUCaacggacuaGUGACGa-- -3' miRNA: 3'- aCCGCAC------------GUGGCUGUAG---------CACUGCcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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