miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 5' -56.5 NC_002794.1 + 155979 0.66 0.916118
Target:  5'- gGGCGUGUcgaACCGACGacgaucUCGgacgagcGACGGg- -3'
miRNA:   3'- aCCGCACG---UGGCUGU------AGCa------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 71245 0.66 0.916118
Target:  5'- cGGCGUGgACCGGCA-CGUaGAacuugaGGUc -3'
miRNA:   3'- aCCGCACgUGGCUGUaGCA-CUg-----CCAc -5'
10723 5' -56.5 NC_002794.1 + 58060 0.67 0.910358
Target:  5'- cGGCG-GCcCCGGCggCGgcggGACGGg- -3'
miRNA:   3'- aCCGCaCGuGGCUGuaGCa---CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 89247 0.67 0.910358
Target:  5'- cGGCGgGUACCGucgcuggcCGUCGaucucGACGGUGu -3'
miRNA:   3'- aCCGCaCGUGGCu-------GUAGCa----CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 123412 0.67 0.904374
Target:  5'- cGGCGUGgAguaCGACAgcgaCGaGGCGGUGa -3'
miRNA:   3'- aCCGCACgUg--GCUGUa---GCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 147099 0.67 0.900676
Target:  5'- aGGCGUcgGCGCCcggcccaaggacgaaGACGUCGacGGCGGUu -3'
miRNA:   3'- aCCGCA--CGUGG---------------CUGUAGCa-CUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 106263 0.67 0.898166
Target:  5'- cGGCGaGCGCCGcGCGUCGcgccgccucgGACGGc- -3'
miRNA:   3'- aCCGCaCGUGGC-UGUAGCa---------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 142897 0.67 0.898166
Target:  5'- aGGCGUGC-CCGGCGUCcuc-CGGg- -3'
miRNA:   3'- aCCGCACGuGGCUGUAGcacuGCCac -5'
10723 5' -56.5 NC_002794.1 + 30934 0.67 0.897533
Target:  5'- aGGC-UGCGCCcgccgcgccgcgaGACAggcacgggaugUCGUGACGGUc -3'
miRNA:   3'- aCCGcACGUGG-------------CUGU-----------AGCACUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 118145 0.67 0.896261
Target:  5'- cGGgGUGCACCGuCAuggggcucagggugUCGUaGGCGGc- -3'
miRNA:   3'- aCCgCACGUGGCuGU--------------AGCA-CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 54036 0.67 0.891738
Target:  5'- gGGCGUcaGCugCGACccgucgaCGUGGCGGc- -3'
miRNA:   3'- aCCGCA--CGugGCUGua-----GCACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 131327 0.67 0.891738
Target:  5'- cUGG-GUG-GCCGGCucgcccGUCGUGACGGUu -3'
miRNA:   3'- -ACCgCACgUGGCUG------UAGCACUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 64824 0.67 0.891738
Target:  5'- cGGCGagccgGCGCCGACGacCG-GACGGc- -3'
miRNA:   3'- aCCGCa----CGUGGCUGUa-GCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 139445 0.67 0.885094
Target:  5'- -cGCGcGCGCCGAUcggcagGUCGUcgugcgccagGACGGUGg -3'
miRNA:   3'- acCGCaCGUGGCUG------UAGCA----------CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 190513 0.67 0.878235
Target:  5'- cGGCGUGCccagccgcguGCCGAuCGUCGUccaccaGCGGUc -3'
miRNA:   3'- aCCGCACG----------UGGCU-GUAGCAc-----UGCCAc -5'
10723 5' -56.5 NC_002794.1 + 182195 0.68 0.87402
Target:  5'- gGGCcucgGCGCCGGCGUCGcgccacggggcuccGACGGUc -3'
miRNA:   3'- aCCGca--CGUGGCUGUAGCa-------------CUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 53603 0.68 0.871168
Target:  5'- cGGCGU-CACCGggccgccgcaGCGUCG-GACGGa- -3'
miRNA:   3'- aCCGCAcGUGGC----------UGUAGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 117091 0.68 0.863896
Target:  5'- cGGCGUGUccacuucgGCCGACAU-GUGuuuaaAUGGUGc -3'
miRNA:   3'- aCCGCACG--------UGGCUGUAgCAC-----UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 154831 0.68 0.863158
Target:  5'- aGGCGUcCGCggcuuccuccaagUGAgucuCGUCGUGACGGUGa -3'
miRNA:   3'- aCCGCAcGUG-------------GCU----GUAGCACUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 116920 0.68 0.856425
Target:  5'- cGGCGUcgGCuCCGGCGUCGUcggcguccccGGCGGc- -3'
miRNA:   3'- aCCGCA--CGuGGCUGUAGCA----------CUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.