Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10723 | 5' | -56.5 | NC_002794.1 | + | 102158 | 0.74 | 0.556859 |
Target: 5'- cGGCGUGCgcGCCGGggcCAUCGUGGCGc-- -3' miRNA: 3'- aCCGCACG--UGGCU---GUAGCACUGCcac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 138955 | 0.79 | 0.309436 |
Target: 5'- gUGGCGUGCugCGACG-CGgcgGACGGg- -3' miRNA: 3'- -ACCGCACGugGCUGUaGCa--CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 141312 | 0.81 | 0.234533 |
Target: 5'- cGGCGacgGCACCGGCGUCGgcuCGGUGg -3' miRNA: 3'- aCCGCa--CGUGGCUGUAGCacuGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 157687 | 1.09 | 0.003752 |
Target: 5'- uUGGCGUGCACCGACAUCGUGACGGUGa -3' miRNA: 3'- -ACCGCACGUGGCUGUAGCACUGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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