miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 5' -56.5 NC_002794.1 + 82048 0.66 0.932032
Target:  5'- cGGCGgcgGCGgCGGCGUCGUccuCGGc- -3'
miRNA:   3'- aCCGCa--CGUgGCUGUAGCAcu-GCCac -5'
10723 5' -56.5 NC_002794.1 + 89247 0.67 0.910358
Target:  5'- cGGCGgGUACCGucgcuggcCGUCGaucucGACGGUGu -3'
miRNA:   3'- aCCGCaCGUGGCu-------GUAGCa----CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 89965 0.66 0.936882
Target:  5'- aGGCGUucggaccgugguGCGCCGGCGUUc-GAcCGGUGc -3'
miRNA:   3'- aCCGCA------------CGUGGCUGUAGcaCU-GCCAC- -5'
10723 5' -56.5 NC_002794.1 + 95893 0.68 0.84091
Target:  5'- cGGCGaggGCGCaCGACGUgGUG-CGGg- -3'
miRNA:   3'- aCCGCa--CGUG-GCUGUAgCACuGCCac -5'
10723 5' -56.5 NC_002794.1 + 100676 0.66 0.941505
Target:  5'- gGGCGcuacGCGcCCGAguUCGUGACcGGg- -3'
miRNA:   3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5'
10723 5' -56.5 NC_002794.1 + 102158 0.74 0.556859
Target:  5'- cGGCGUGCgcGCCGGggcCAUCGUGGCGc-- -3'
miRNA:   3'- aCCGCACG--UGGCU---GUAGCACUGCcac -5'
10723 5' -56.5 NC_002794.1 + 102335 0.66 0.92165
Target:  5'- aGGCGUGgACCuggugcgcaaGACGgcgugccgcuUCGUgaaGACGGUGg -3'
miRNA:   3'- aCCGCACgUGG----------CUGU----------AGCA---CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 106263 0.67 0.898166
Target:  5'- cGGCGaGCGCCGcGCGUCGcgccgccucgGACGGc- -3'
miRNA:   3'- aCCGCaCGUGGC-UGUAGCa---------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 106997 0.71 0.68604
Target:  5'- gUGGCG-GCGCUGGCcgaCGcGACGGUGc -3'
miRNA:   3'- -ACCGCaCGUGGCUGua-GCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 107535 0.7 0.734727
Target:  5'- cGGCGcgGCGCCGGCggCGacgaccGCGGUGg -3'
miRNA:   3'- aCCGCa-CGUGGCUGuaGCac----UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 112347 0.73 0.576542
Target:  5'- cGGCG-GCGCCGGCggCGgGGCGGg- -3'
miRNA:   3'- aCCGCaCGUGGCUGuaGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 113732 0.66 0.925912
Target:  5'- cGGCGacUGCACCGACcggaccaggcgCGcGAgGGUGu -3'
miRNA:   3'- aCCGC--ACGUGGCUGua---------GCaCUgCCAC- -5'
10723 5' -56.5 NC_002794.1 + 116382 0.66 0.932032
Target:  5'- gUGGCGUGCGggUCGAagacgaaggUGUGGCGGg- -3'
miRNA:   3'- -ACCGCACGU--GGCUgua------GCACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 116920 0.68 0.856425
Target:  5'- cGGCGUcgGCuCCGGCGUCGUcggcguccccGGCGGc- -3'
miRNA:   3'- aCCGCA--CGuGGCUGUAGCA----------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 117091 0.68 0.863896
Target:  5'- cGGCGUGUccacuucgGCCGACAU-GUGuuuaaAUGGUGc -3'
miRNA:   3'- aCCGCACG--------UGGCUGUAgCAC-----UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 118145 0.67 0.896261
Target:  5'- cGGgGUGCACCGuCAuggggcucagggugUCGUaGGCGGc- -3'
miRNA:   3'- aCCgCACGUGGCuGU--------------AGCA-CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 118271 0.71 0.68604
Target:  5'- gGGCGgcgGCGCCGGCGUCGggGACc--- -3'
miRNA:   3'- aCCGCa--CGUGGCUGUAGCa-CUGccac -5'
10723 5' -56.5 NC_002794.1 + 122899 0.71 0.705701
Target:  5'- cGaGCGcacggGCGCCGAguUCGcGACGGUGu -3'
miRNA:   3'- aC-CGCa----CGUGGCUguAGCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 123412 0.67 0.904374
Target:  5'- cGGCGUGgAguaCGACAgcgaCGaGGCGGUGa -3'
miRNA:   3'- aCCGCACgUg--GCUGUa---GCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 125690 0.7 0.762988
Target:  5'- gGGCGacgUGUugCuGCG-CGUGACGGUGg -3'
miRNA:   3'- aCCGC---ACGugGcUGUaGCACUGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.