Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10723 | 5' | -56.5 | NC_002794.1 | + | 167237 | 0.66 | 0.941053 |
Target: 5'- cGG-GUGCACCGGaa-CGUGACuuuuucguaaucuGGUGg -3' miRNA: 3'- aCCgCACGUGGCUguaGCACUG-------------CCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 182195 | 0.68 | 0.87402 |
Target: 5'- gGGCcucgGCGCCGGCGUCGcgccacggggcuccGACGGUc -3' miRNA: 3'- aCCGca--CGUGGCUGUAGCa-------------CUGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 190513 | 0.67 | 0.878235 |
Target: 5'- cGGCGUGCccagccgcguGCCGAuCGUCGUccaccaGCGGUc -3' miRNA: 3'- aCCGCACG----------UGGCU-GUAGCAc-----UGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 193117 | 0.69 | 0.816298 |
Target: 5'- aGGgGUGCACCGuCGUCG--GCGGc- -3' miRNA: 3'- aCCgCACGUGGCuGUAGCacUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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