Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10723 | 5' | -56.5 | NC_002794.1 | + | 95893 | 0.68 | 0.84091 |
Target: 5'- cGGCGaggGCGCaCGACGUgGUG-CGGg- -3' miRNA: 3'- aCCGCa--CGUG-GCUGUAgCACuGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 89965 | 0.66 | 0.936882 |
Target: 5'- aGGCGUucggaccgugguGCGCCGGCGUUc-GAcCGGUGc -3' miRNA: 3'- aCCGCA------------CGUGGCUGUAGcaCU-GCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 89247 | 0.67 | 0.910358 |
Target: 5'- cGGCGgGUACCGucgcuggcCGUCGaucucGACGGUGu -3' miRNA: 3'- aCCGCaCGUGGCu-------GUAGCa----CUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 82048 | 0.66 | 0.932032 |
Target: 5'- cGGCGgcgGCGgCGGCGUCGUccuCGGc- -3' miRNA: 3'- aCCGCa--CGUgGCUGUAGCAcu-GCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 71245 | 0.66 | 0.916118 |
Target: 5'- cGGCGUGgACCGGCA-CGUaGAacuugaGGUc -3' miRNA: 3'- aCCGCACgUGGCUGUaGCA-CUg-----CCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 67210 | 0.66 | 0.941505 |
Target: 5'- gGGCgGUGCGCuCGGCGcCG-GGCGGc- -3' miRNA: 3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 65968 | 0.73 | 0.616307 |
Target: 5'- cGGCGUcuccuccgGCACCaACGUCGaacugGGCGGUGa -3' miRNA: 3'- aCCGCA--------CGUGGcUGUAGCa----CUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 65929 | 0.7 | 0.734727 |
Target: 5'- cGGCG-GCGgUGGCGUCGgcGGCGGUa -3' miRNA: 3'- aCCGCaCGUgGCUGUAGCa-CUGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 64824 | 0.67 | 0.891738 |
Target: 5'- cGGCGagccgGCGCCGACGacCG-GACGGc- -3' miRNA: 3'- aCCGCa----CGUGGCUGUa-GCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 58060 | 0.67 | 0.910358 |
Target: 5'- cGGCG-GCcCCGGCggCGgcggGACGGg- -3' miRNA: 3'- aCCGCaCGuGGCUGuaGCa---CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 56103 | 0.7 | 0.762988 |
Target: 5'- cGuGCGUGCugCGcuggccCGUCaUGACGGUGa -3' miRNA: 3'- aC-CGCACGugGCu-----GUAGcACUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 55298 | 0.72 | 0.626294 |
Target: 5'- gGGCG-GCGgCGGCGUCGcGGCGGg- -3' miRNA: 3'- aCCGCaCGUgGCUGUAGCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 54036 | 0.67 | 0.891738 |
Target: 5'- gGGCGUcaGCugCGACccgucgaCGUGGCGGc- -3' miRNA: 3'- aCCGCA--CGugGCUGua-----GCACUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 53603 | 0.68 | 0.871168 |
Target: 5'- cGGCGU-CACCGggccgccgcaGCGUCG-GACGGa- -3' miRNA: 3'- aCCGCAcGUGGC----------UGUAGCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 51964 | 0.68 | 0.84091 |
Target: 5'- aGGCcuccgGgACCGGCAUCGUGGCGc-- -3' miRNA: 3'- aCCGca---CgUGGCUGUAGCACUGCcac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 32307 | 0.66 | 0.926955 |
Target: 5'- cGGCGgccGCGCCGGCcgCG-GcCGGa- -3' miRNA: 3'- aCCGCa--CGUGGCUGuaGCaCuGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 30934 | 0.67 | 0.897533 |
Target: 5'- aGGC-UGCGCCcgccgcgccgcgaGACAggcacgggaugUCGUGACGGUc -3' miRNA: 3'- aCCGcACGUGG-------------CUGU-----------AGCACUGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 21460 | 0.66 | 0.926955 |
Target: 5'- cGGCGU-CGCCGugA-CGgcaACGGUGg -3' miRNA: 3'- aCCGCAcGUGGCugUaGCac-UGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 18914 | 0.66 | 0.932032 |
Target: 5'- cGGCGcccggacugGCGCUGGaucgguUCGUGACGGa- -3' miRNA: 3'- aCCGCa--------CGUGGCUgu----AGCACUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 14663 | 0.66 | 0.926955 |
Target: 5'- cGGCGUcGguCCGAC-UCGcGGCGGc- -3' miRNA: 3'- aCCGCA-CguGGCUGuAGCaCUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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