miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10723 5' -56.5 NC_002794.1 + 136717 0.66 0.936882
Target:  5'- aGGCGccgGUcCCGGCGUCcaGGCGGUc -3'
miRNA:   3'- aCCGCa--CGuGGCUGUAGcaCUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 167237 0.66 0.941053
Target:  5'- cGG-GUGCACCGGaa-CGUGACuuuuucguaaucuGGUGg -3'
miRNA:   3'- aCCgCACGUGGCUguaGCACUG-------------CCAC- -5'
10723 5' -56.5 NC_002794.1 + 67210 0.66 0.941505
Target:  5'- gGGCgGUGCGCuCGGCGcCG-GGCGGc- -3'
miRNA:   3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 100676 0.66 0.941505
Target:  5'- gGGCGcuacGCGcCCGAguUCGUGACcGGg- -3'
miRNA:   3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5'
10723 5' -56.5 NC_002794.1 + 137622 0.66 0.941505
Target:  5'- cGGCgGUGCccacgaCGACGUCcUGGCGGg- -3'
miRNA:   3'- aCCG-CACGug----GCUGUAGcACUGCCac -5'
10723 5' -56.5 NC_002794.1 + 21460 0.66 0.926955
Target:  5'- cGGCGU-CGCCGugA-CGgcaACGGUGg -3'
miRNA:   3'- aCCGCAcGUGGCugUaGCac-UGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 32307 0.66 0.926955
Target:  5'- cGGCGgccGCGCCGGCcgCG-GcCGGa- -3'
miRNA:   3'- aCCGCa--CGUGGCUGuaGCaCuGCCac -5'
10723 5' -56.5 NC_002794.1 + 118145 0.67 0.896261
Target:  5'- cGGgGUGCACCGuCAuggggcucagggugUCGUaGGCGGc- -3'
miRNA:   3'- aCCgCACGUGGCuGU--------------AGCA-CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 142897 0.67 0.898166
Target:  5'- aGGCGUGC-CCGGCGUCcuc-CGGg- -3'
miRNA:   3'- aCCGCACGuGGCUGUAGcacuGCCac -5'
10723 5' -56.5 NC_002794.1 + 106263 0.67 0.898166
Target:  5'- cGGCGaGCGCCGcGCGUCGcgccgccucgGACGGc- -3'
miRNA:   3'- aCCGCaCGUGGC-UGUAGCa---------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 123412 0.67 0.904374
Target:  5'- cGGCGUGgAguaCGACAgcgaCGaGGCGGUGa -3'
miRNA:   3'- aCCGCACgUg--GCUGUa---GCaCUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 147099 0.67 0.900676
Target:  5'- aGGCGUcgGCGCCcggcccaaggacgaaGACGUCGacGGCGGUu -3'
miRNA:   3'- aCCGCA--CGUGG---------------CUGUAGCa-CUGCCAc -5'
10723 5' -56.5 NC_002794.1 + 89247 0.67 0.910358
Target:  5'- cGGCGgGUACCGucgcuggcCGUCGaucucGACGGUGu -3'
miRNA:   3'- aCCGCaCGUGGCu-------GUAGCa----CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 58060 0.67 0.910358
Target:  5'- cGGCG-GCcCCGGCggCGgcggGACGGg- -3'
miRNA:   3'- aCCGCaCGuGGCUGuaGCa---CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 71245 0.66 0.916118
Target:  5'- cGGCGUGgACCGGCA-CGUaGAacuugaGGUc -3'
miRNA:   3'- aCCGCACgUGGCUGUaGCA-CUg-----CCAc -5'
10723 5' -56.5 NC_002794.1 + 102335 0.66 0.92165
Target:  5'- aGGCGUGgACCuggugcgcaaGACGgcgugccgcuUCGUgaaGACGGUGg -3'
miRNA:   3'- aCCGCACgUGG----------CUGU----------AGCA---CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 155979 0.66 0.916118
Target:  5'- gGGCGUGUcgaACCGACGacgaucUCGgacgagcGACGGg- -3'
miRNA:   3'- aCCGCACG---UGGCUGU------AGCa------CUGCCac -5'
10723 5' -56.5 NC_002794.1 + 544 0.66 0.92165
Target:  5'- uUGGCaucuUGC-CCGGCcUCGgcgcGGCGGUGg -3'
miRNA:   3'- -ACCGc---ACGuGGCUGuAGCa---CUGCCAC- -5'
10723 5' -56.5 NC_002794.1 + 14663 0.66 0.926955
Target:  5'- cGGCGUcGguCCGAC-UCGcGGCGGc- -3'
miRNA:   3'- aCCGCA-CguGGCUGuAGCaCUGCCac -5'
10723 5' -56.5 NC_002794.1 + 113732 0.66 0.925912
Target:  5'- cGGCGacUGCACCGACcggaccaggcgCGcGAgGGUGu -3'
miRNA:   3'- aCCGC--ACGUGGCUGua---------GCaCUgCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.