Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10723 | 5' | -56.5 | NC_002794.1 | + | 136717 | 0.66 | 0.936882 |
Target: 5'- aGGCGccgGUcCCGGCGUCcaGGCGGUc -3' miRNA: 3'- aCCGCa--CGuGGCUGUAGcaCUGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 167237 | 0.66 | 0.941053 |
Target: 5'- cGG-GUGCACCGGaa-CGUGACuuuuucguaaucuGGUGg -3' miRNA: 3'- aCCgCACGUGGCUguaGCACUG-------------CCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 67210 | 0.66 | 0.941505 |
Target: 5'- gGGCgGUGCGCuCGGCGcCG-GGCGGc- -3' miRNA: 3'- aCCG-CACGUG-GCUGUaGCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 100676 | 0.66 | 0.941505 |
Target: 5'- gGGCGcuacGCGcCCGAguUCGUGACcGGg- -3' miRNA: 3'- aCCGCa---CGU-GGCUguAGCACUG-CCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 137622 | 0.66 | 0.941505 |
Target: 5'- cGGCgGUGCccacgaCGACGUCcUGGCGGg- -3' miRNA: 3'- aCCG-CACGug----GCUGUAGcACUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 21460 | 0.66 | 0.926955 |
Target: 5'- cGGCGU-CGCCGugA-CGgcaACGGUGg -3' miRNA: 3'- aCCGCAcGUGGCugUaGCac-UGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 32307 | 0.66 | 0.926955 |
Target: 5'- cGGCGgccGCGCCGGCcgCG-GcCGGa- -3' miRNA: 3'- aCCGCa--CGUGGCUGuaGCaCuGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 118145 | 0.67 | 0.896261 |
Target: 5'- cGGgGUGCACCGuCAuggggcucagggugUCGUaGGCGGc- -3' miRNA: 3'- aCCgCACGUGGCuGU--------------AGCA-CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 142897 | 0.67 | 0.898166 |
Target: 5'- aGGCGUGC-CCGGCGUCcuc-CGGg- -3' miRNA: 3'- aCCGCACGuGGCUGUAGcacuGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 106263 | 0.67 | 0.898166 |
Target: 5'- cGGCGaGCGCCGcGCGUCGcgccgccucgGACGGc- -3' miRNA: 3'- aCCGCaCGUGGC-UGUAGCa---------CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 123412 | 0.67 | 0.904374 |
Target: 5'- cGGCGUGgAguaCGACAgcgaCGaGGCGGUGa -3' miRNA: 3'- aCCGCACgUg--GCUGUa---GCaCUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 147099 | 0.67 | 0.900676 |
Target: 5'- aGGCGUcgGCGCCcggcccaaggacgaaGACGUCGacGGCGGUu -3' miRNA: 3'- aCCGCA--CGUGG---------------CUGUAGCa-CUGCCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 89247 | 0.67 | 0.910358 |
Target: 5'- cGGCGgGUACCGucgcuggcCGUCGaucucGACGGUGu -3' miRNA: 3'- aCCGCaCGUGGCu-------GUAGCa----CUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 58060 | 0.67 | 0.910358 |
Target: 5'- cGGCG-GCcCCGGCggCGgcggGACGGg- -3' miRNA: 3'- aCCGCaCGuGGCUGuaGCa---CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 71245 | 0.66 | 0.916118 |
Target: 5'- cGGCGUGgACCGGCA-CGUaGAacuugaGGUc -3' miRNA: 3'- aCCGCACgUGGCUGUaGCA-CUg-----CCAc -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 102335 | 0.66 | 0.92165 |
Target: 5'- aGGCGUGgACCuggugcgcaaGACGgcgugccgcuUCGUgaaGACGGUGg -3' miRNA: 3'- aCCGCACgUGG----------CUGU----------AGCA---CUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 155979 | 0.66 | 0.916118 |
Target: 5'- gGGCGUGUcgaACCGACGacgaucUCGgacgagcGACGGg- -3' miRNA: 3'- aCCGCACG---UGGCUGU------AGCa------CUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 544 | 0.66 | 0.92165 |
Target: 5'- uUGGCaucuUGC-CCGGCcUCGgcgcGGCGGUGg -3' miRNA: 3'- -ACCGc---ACGuGGCUGuAGCa---CUGCCAC- -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 14663 | 0.66 | 0.926955 |
Target: 5'- cGGCGUcGguCCGAC-UCGcGGCGGc- -3' miRNA: 3'- aCCGCA-CguGGCUGuAGCaCUGCCac -5' |
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10723 | 5' | -56.5 | NC_002794.1 | + | 113732 | 0.66 | 0.925912 |
Target: 5'- cGGCGacUGCACCGACcggaccaggcgCGcGAgGGUGu -3' miRNA: 3'- aCCGC--ACGUGGCUGua---------GCaCUgCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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