miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 3' -53.3 NC_002794.1 + 112271 0.66 0.989094
Target:  5'- gCGuCUCGUCcuCGGcCUCcGUGUCGg -3'
miRNA:   3'- -GCuGAGCAGuuGCCaGAGcCACAGUg -5'
10724 3' -53.3 NC_002794.1 + 106330 0.66 0.989094
Target:  5'- gCGACggGUCGACGGUUcgcCGG-GUCGa -3'
miRNA:   3'- -GCUGagCAGUUGCCAGa--GCCaCAGUg -5'
10724 3' -53.3 NC_002794.1 + 44217 0.66 0.987671
Target:  5'- cCGGCUCGggcgcCGAgGG-CUCGGUGcCGg -3'
miRNA:   3'- -GCUGAGCa----GUUgCCaGAGCCACaGUg -5'
10724 3' -53.3 NC_002794.1 + 110466 0.66 0.986108
Target:  5'- cCGGCUCGUCGGCucggggGGUagagaggCGGUGgcggCGCc -3'
miRNA:   3'- -GCUGAGCAGUUG------CCAga-----GCCACa---GUG- -5'
10724 3' -53.3 NC_002794.1 + 138764 0.66 0.982531
Target:  5'- cCGAgUCG-CGGCGGUCgguggaGGggagggGUCACg -3'
miRNA:   3'- -GCUgAGCaGUUGCCAGag----CCa-----CAGUG- -5'
10724 3' -53.3 NC_002794.1 + 37956 0.67 0.980502
Target:  5'- gCGACUCGcUCGGCGG-CUC-GUGgUACg -3'
miRNA:   3'- -GCUGAGC-AGUUGCCaGAGcCACaGUG- -5'
10724 3' -53.3 NC_002794.1 + 148209 0.67 0.978302
Target:  5'- cCGGCgcgCGcUCGAuCGGUCUCcGGUcggcGUCACc -3'
miRNA:   3'- -GCUGa--GC-AGUU-GCCAGAG-CCA----CAGUG- -5'
10724 3' -53.3 NC_002794.1 + 138425 0.67 0.978302
Target:  5'- cCGACUCGUCGagccGCGGUggCGGcGgCGCc -3'
miRNA:   3'- -GCUGAGCAGU----UGCCAgaGCCaCaGUG- -5'
10724 3' -53.3 NC_002794.1 + 149056 0.67 0.978302
Target:  5'- aCGcGCUCGUCGAC-GUCgagCGGgugGUCAa -3'
miRNA:   3'- -GC-UGAGCAGUUGcCAGa--GCCa--CAGUg -5'
10724 3' -53.3 NC_002794.1 + 8734 0.67 0.97336
Target:  5'- aGAC-CGUgGagcGCGuGUCUCGGgcgUGUCGCg -3'
miRNA:   3'- gCUGaGCAgU---UGC-CAGAGCC---ACAGUG- -5'
10724 3' -53.3 NC_002794.1 + 177586 0.67 0.97336
Target:  5'- uGACUCGaaggcUCGGCGGagcCUCGG-GUCGg -3'
miRNA:   3'- gCUGAGC-----AGUUGCCa--GAGCCaCAGUg -5'
10724 3' -53.3 NC_002794.1 + 174694 0.68 0.964492
Target:  5'- uCGACgucUGUCAacauACGGUCUCGuGUucGUUACg -3'
miRNA:   3'- -GCUGa--GCAGU----UGCCAGAGC-CA--CAGUG- -5'
10724 3' -53.3 NC_002794.1 + 109103 0.68 0.953736
Target:  5'- aCGugUU-UCGGCGGUUUCGGUGcCGg -3'
miRNA:   3'- -GCugAGcAGUUGCCAGAGCCACaGUg -5'
10724 3' -53.3 NC_002794.1 + 129266 0.69 0.949295
Target:  5'- gCGcCUCGUCGugaGCGGgccggucUCUCGGUGguacCGCg -3'
miRNA:   3'- -GCuGAGCAGU---UGCC-------AGAGCCACa---GUG- -5'
10724 3' -53.3 NC_002794.1 + 26659 0.69 0.945457
Target:  5'- cCGGCUCGUCGGCGG----GGUGgagCGCc -3'
miRNA:   3'- -GCUGAGCAGUUGCCagagCCACa--GUG- -5'
10724 3' -53.3 NC_002794.1 + 4993 0.7 0.915069
Target:  5'- aGACUCuaagucagGUCGACGGaCUCGGacUCGCg -3'
miRNA:   3'- gCUGAG--------CAGUUGCCaGAGCCacAGUG- -5'
10724 3' -53.3 NC_002794.1 + 129455 0.7 0.903075
Target:  5'- aGugUCGUgAACGGUCcagCGGUcgggcaguuuGUCGCc -3'
miRNA:   3'- gCugAGCAgUUGCCAGa--GCCA----------CAGUG- -5'
10724 3' -53.3 NC_002794.1 + 138127 0.7 0.903075
Target:  5'- -uGCUCGUCGcCGGUCUCGGgcggcgGUUucuuGCg -3'
miRNA:   3'- gcUGAGCAGUuGCCAGAGCCa-----CAG----UG- -5'
10724 3' -53.3 NC_002794.1 + 177455 0.71 0.861724
Target:  5'- gGACUCGUC-GCGGUCaCGGUccCACc -3'
miRNA:   3'- gCUGAGCAGuUGCCAGaGCCAcaGUG- -5'
10724 3' -53.3 NC_002794.1 + 156736 0.73 0.783817
Target:  5'- gCGGCUCGUCGuGCGGugugcguuauauagUCUCcGGUGUCGa -3'
miRNA:   3'- -GCUGAGCAGU-UGCC--------------AGAG-CCACAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.