miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 14178 0.66 0.820906
Target:  5'- cCUGCGccuccGAGAcgucagcguCCCG-GCCCgCUGGCCGCc -3'
miRNA:   3'- -GACGC-----CUCU---------GGGUgUGGG-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 18891 0.66 0.820906
Target:  5'- -cGCGGAGcgucACCC-CuCCCC-GACgGCg -3'
miRNA:   3'- gaCGCCUC----UGGGuGuGGGGaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 23974 0.66 0.82009
Target:  5'- -aGCGGcgAGGCCgGCGCCaccgucgcuccguCCgacgGGCCGCc -3'
miRNA:   3'- gaCGCC--UCUGGgUGUGG-------------GGa---CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100548 0.66 0.812676
Target:  5'- -aGCGGGcGGCCUu--CCCCgUGGCCGa -3'
miRNA:   3'- gaCGCCU-CUGGGuguGGGG-ACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 187194 0.66 0.812676
Target:  5'- -aGcCGGAuGACCaGCACCCC-GACCa- -3'
miRNA:   3'- gaC-GCCU-CUGGgUGUGGGGaCUGGcg -5'
10724 5' -60.2 NC_002794.1 + 116147 0.66 0.812676
Target:  5'- -gGCGGccaGGGCCUGCACCgCCU--CCGUg -3'
miRNA:   3'- gaCGCC---UCUGGGUGUGG-GGAcuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 14498 0.66 0.812676
Target:  5'- -gGCGGcGGCCCGCGCUCgCgGcgcucguggcGCCGCu -3'
miRNA:   3'- gaCGCCuCUGGGUGUGGG-GaC----------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 68233 0.66 0.812676
Target:  5'- cCUGCGGAcGCa-GCGCCCC-GACCu- -3'
miRNA:   3'- -GACGCCUcUGggUGUGGGGaCUGGcg -5'
10724 5' -60.2 NC_002794.1 + 12414 0.66 0.812676
Target:  5'- -cGCGGAcGGCgCGCGCCgaCUGGCaGCu -3'
miRNA:   3'- gaCGCCU-CUGgGUGUGGg-GACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 68685 0.66 0.812676
Target:  5'- -cGUGGccGCCC-CACCCCaGucuCCGCg -3'
miRNA:   3'- gaCGCCucUGGGuGUGGGGaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 93359 0.66 0.811845
Target:  5'- gUGCcGcAGAaccaccucaacuuCCCGCACCUgCUGGCCGCc -3'
miRNA:   3'- gACGcC-UCU-------------GGGUGUGGG-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 34999 0.66 0.810178
Target:  5'- gCUGCGGGcccGGCacuauguacagcaaCCGC-CUCCUGAuCCGCg -3'
miRNA:   3'- -GACGCCU---CUG--------------GGUGuGGGGACU-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 187055 0.66 0.804298
Target:  5'- --cCGGAG-CCCGCGgCCCgccagGuGCCGCa -3'
miRNA:   3'- gacGCCUCuGGGUGUgGGGa----C-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 191363 0.66 0.804298
Target:  5'- -aGuCGGGGACgggccggacccuCCGCGCCCgC-GGCCGCc -3'
miRNA:   3'- gaC-GCCUCUG------------GGUGUGGG-GaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 177128 0.66 0.804298
Target:  5'- -aGCuGGAGuuCCuguUGCCCCUGauucgGCCGCa -3'
miRNA:   3'- gaCG-CCUCugGGu--GUGGGGAC-----UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 17949 0.66 0.795778
Target:  5'- -gGCGGccACCCGCGacucgCCCgGGCCGUg -3'
miRNA:   3'- gaCGCCucUGGGUGUg----GGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 59391 0.66 0.795778
Target:  5'- gCUGCGG--GCCUACGCCUac-GCCGUg -3'
miRNA:   3'- -GACGCCucUGGGUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 68429 0.66 0.787125
Target:  5'- --aCGGuGGCCCAcCACCgCUGGuuCCGCc -3'
miRNA:   3'- gacGCCuCUGGGU-GUGGgGACU--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 104449 0.66 0.778346
Target:  5'- -cGCGGGcGGCCCGaGCCCg-GGCgGCg -3'
miRNA:   3'- gaCGCCU-CUGGGUgUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 115982 0.66 0.778346
Target:  5'- -gGaCGGGGAgCgGCGCCgCggaGACCGCg -3'
miRNA:   3'- gaC-GCCUCUgGgUGUGGgGa--CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.