miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 42047 0.67 0.769449
Target:  5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3'
miRNA:   3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 107098 0.67 0.768553
Target:  5'- -gGCGGGggugugucgcugcGAgCCGCGCUUCUuuGACCGCg -3'
miRNA:   3'- gaCGCCU-------------CUgGGUGUGGGGA--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 44681 0.67 0.769449
Target:  5'- -aGCGccaucguccAGACCCAcCGCCgCCcGGCCGCg -3'
miRNA:   3'- gaCGCc--------UCUGGGU-GUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 72440 0.68 0.694944
Target:  5'- -gGCGGAGGgaccggcggcgcCCCGCGCCCggccCCGCg -3'
miRNA:   3'- gaCGCCUCU------------GGGUGUGGGgacuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 47905 0.68 0.694944
Target:  5'- -cGCGGucccgcacGACCCAgGCCCC-GACCcCg -3'
miRNA:   3'- gaCGCCu-------CUGGGUgUGGGGaCUGGcG- -5'
10724 5' -60.2 NC_002794.1 + 19328 0.68 0.694944
Target:  5'- -cGCuGGcGACCCGCGcgccggucacCCCCUcGCCGCc -3'
miRNA:   3'- gaCG-CCuCUGGGUGU----------GGGGAcUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 183617 0.68 0.693026
Target:  5'- -cGCGGccGGcgccCCCGCGCCCCcgacucgagcagGGCCGCc -3'
miRNA:   3'- gaCGCC--UCu---GGGUGUGGGGa-----------CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 74104 0.68 0.685335
Target:  5'- gCUGCGGcuGCUCAC-CCUCgagcaGGCCGCc -3'
miRNA:   3'- -GACGCCucUGGGUGuGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 107182 0.68 0.685335
Target:  5'- -gGCGGAG-CCgGCGCCgCC--GCCGCc -3'
miRNA:   3'- gaCGCCUCuGGgUGUGG-GGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 181637 0.68 0.675685
Target:  5'- -gGCGGAG-CCCGgGCUCCgggaagaaaACCGCg -3'
miRNA:   3'- gaCGCCUCuGGGUgUGGGGac-------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 91167 0.68 0.694944
Target:  5'- -cGUGGAGGCCUucaaGCucCCCCUGuACCcgGCg -3'
miRNA:   3'- gaCGCCUCUGGG----UGu-GGGGAC-UGG--CG- -5'
10724 5' -60.2 NC_002794.1 + 101337 0.68 0.694944
Target:  5'- -gGUGGGcuaucACCaCGCGCCCgUGGCCGUg -3'
miRNA:   3'- gaCGCCUc----UGG-GUGUGGGgACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 34583 0.68 0.704506
Target:  5'- cCUGCGGcugcccgaguuGGACCCgaucccggaggaGCACcucuuccucuCCCUGACCGa -3'
miRNA:   3'- -GACGCC-----------UCUGGG------------UGUG----------GGGACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 110306 0.68 0.694944
Target:  5'- -cGCGGGGACUCuccgcuCGCCgCCgcgacGCCGCg -3'
miRNA:   3'- gaCGCCUCUGGGu-----GUGG-GGac---UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 49882 0.68 0.704506
Target:  5'- -cGUGGAGcGCCCGCAgCCCCgaaacACgGCg -3'
miRNA:   3'- gaCGCCUC-UGGGUGU-GGGGac---UGgCG- -5'
10724 5' -60.2 NC_002794.1 + 108395 0.68 0.711167
Target:  5'- -aGCGGAGgcuccggcggcggcGCCCACcacggcgcccACCCCgcGACCGg -3'
miRNA:   3'- gaCGCCUC--------------UGGGUG----------UGGGGa-CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 115596 0.68 0.714013
Target:  5'- gCUGCGGucGACCCGCuCgCCCggcGCCGg -3'
miRNA:   3'- -GACGCCu-CUGGGUGuG-GGGac-UGGCg -5'
10724 5' -60.2 NC_002794.1 + 52487 0.68 0.713065
Target:  5'- -cGCGGAcGACCUggccaucGCGCUCaucaUGGCCGUg -3'
miRNA:   3'- gaCGCCU-CUGGG-------UGUGGGg---ACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 80901 0.68 0.714013
Target:  5'- -gGCGGcccucgacGACCCGCGCCCgCUcGACCcCg -3'
miRNA:   3'- gaCGCCu-------CUGGGUGUGGG-GA-CUGGcG- -5'
10724 5' -60.2 NC_002794.1 + 113189 0.68 0.666003
Target:  5'- -cGCGGAGGCgCCucCGCCgCCgccACCGCc -3'
miRNA:   3'- gaCGCCUCUG-GGu-GUGG-GGac-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.