miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 49882 0.68 0.704506
Target:  5'- -cGUGGAGcGCCCGCAgCCCCgaaacACgGCg -3'
miRNA:   3'- gaCGCCUC-UGGGUGU-GGGGac---UGgCG- -5'
10724 5' -60.2 NC_002794.1 + 110306 0.68 0.694944
Target:  5'- -cGCGGGGACUCuccgcuCGCCgCCgcgacGCCGCg -3'
miRNA:   3'- gaCGCCUCUGGGu-----GUGG-GGac---UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 34583 0.68 0.704506
Target:  5'- cCUGCGGcugcccgaguuGGACCCgaucccggaggaGCACcucuuccucuCCCUGACCGa -3'
miRNA:   3'- -GACGCC-----------UCUGGG------------UGUG----------GGGACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 101337 0.68 0.694944
Target:  5'- -gGUGGGcuaucACCaCGCGCCCgUGGCCGUg -3'
miRNA:   3'- gaCGCCUc----UGG-GUGUGGGgACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 148814 0.69 0.627101
Target:  5'- -cGCGGAGAUCUggagACugCCCcgcGACCGg -3'
miRNA:   3'- gaCGCCUCUGGG----UGugGGGa--CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 12887 0.69 0.630996
Target:  5'- aUGcCGGAccacGACCCGCucgacugggccgaguACCgCCUGGCCGUc -3'
miRNA:   3'- gAC-GCCU----CUGGGUG---------------UGG-GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 58076 0.69 0.627101
Target:  5'- -gGCGGGacgggcGGCCCgGCGCCCgCgcucGACCGCu -3'
miRNA:   3'- gaCGCCU------CUGGG-UGUGGG-Ga---CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 50432 0.69 0.627101
Target:  5'- -cGCGGuGGCCacgaucugGCACCCgUG-CCGCa -3'
miRNA:   3'- gaCGCCuCUGGg-------UGUGGGgACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 186028 0.69 0.627101
Target:  5'- -gGCccGGACCCGgGCCCCggcUGGCCGUc -3'
miRNA:   3'- gaCGccUCUGGGUgUGGGG---ACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 53723 0.69 0.617367
Target:  5'- -cGgGGuGGACCCGCGCCaUCgccGGCCGCc -3'
miRNA:   3'- gaCgCC-UCUGGGUGUGG-GGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 101258 0.69 0.627101
Target:  5'- -aGCGGGGGgCCGC-CCCCggcgccggUGGCgGCg -3'
miRNA:   3'- gaCGCCUCUgGGUGuGGGG--------ACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 80458 0.69 0.627101
Target:  5'- -cGuCGGcGGCCCGCugCCCgucuuCCGCg -3'
miRNA:   3'- gaC-GCCuCUGGGUGugGGGacu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 60180 0.69 0.635865
Target:  5'- -cGCGGGcgcucGGCCUGCcucuucagcgucgACCCCUacGACCGCg -3'
miRNA:   3'- gaCGCCU-----CUGGGUG-------------UGGGGA--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 183438 0.69 0.636839
Target:  5'- -aGCGG-GACCgGCGCCCgccACCGCc -3'
miRNA:   3'- gaCGCCuCUGGgUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 131687 0.69 0.646573
Target:  5'- -gGCGGucuuAGaACCCAgACCCC-GACCGg -3'
miRNA:   3'- gaCGCC----UC-UGGGUgUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 190095 0.69 0.646573
Target:  5'- -cGCGcAGcuCCCACGCCCCgccGuCCGCg -3'
miRNA:   3'- gaCGCcUCu-GGGUGUGGGGa--CuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 51899 0.69 0.656297
Target:  5'- gCUGC----ACCCGCACCUC-GACCGCu -3'
miRNA:   3'- -GACGccucUGGGUGUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 70203 0.69 0.656297
Target:  5'- -aGCGGAGAUCCAgcuCGCCCg-GACgGUc -3'
miRNA:   3'- gaCGCCUCUGGGU---GUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 115001 0.69 0.656297
Target:  5'- -cGCGGAGcagcuCUCGCACCC---GCCGCg -3'
miRNA:   3'- gaCGCCUCu----GGGUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 16312 0.69 0.617367
Target:  5'- -cGCGGccggcuGGAUCCcCcuGCCCCUGGCCGg -3'
miRNA:   3'- gaCGCC------UCUGGGuG--UGGGGACUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.