miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 156918 1.11 0.001217
Target:  5'- uCUGCGGAGACCCACACCCCUGACCGCg -3'
miRNA:   3'- -GACGCCUCUGGGUGUGGGGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 76107 0.81 0.136094
Target:  5'- -cGCGGAucacuccGACCCGC-CCUCUGACCGCc -3'
miRNA:   3'- gaCGCCU-------CUGGGUGuGGGGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 58438 0.76 0.277128
Target:  5'- -cGCcGAGGCCaCGCugCgCCUGGCCGCg -3'
miRNA:   3'- gaCGcCUCUGG-GUGugG-GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 32166 0.74 0.344835
Target:  5'- -aGCGGuGGCCCGCcugGCCCCgGucCCGCa -3'
miRNA:   3'- gaCGCCuCUGGGUG---UGGGGaCu-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 84966 0.74 0.344835
Target:  5'- -cGCGGAu-CCUugGCCCC-GGCCGCg -3'
miRNA:   3'- gaCGCCUcuGGGugUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 126318 0.74 0.367337
Target:  5'- -aGCGGAgcguGACCCGC-UCgCUGACCGCc -3'
miRNA:   3'- gaCGCCU----CUGGGUGuGGgGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 6047 0.73 0.390828
Target:  5'- -aGCGGAGACUCugaacgACACCcucuaCCUGAUCGCc -3'
miRNA:   3'- gaCGCCUCUGGG------UGUGG-----GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 149671 0.73 0.390828
Target:  5'- -aGCGGGGGCgcgUCGCGCUCgaCUGGCCGCg -3'
miRNA:   3'- gaCGCCUCUG---GGUGUGGG--GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 185796 0.73 0.398874
Target:  5'- -cGCGGGGACCCACAUCgCCggGAUCu- -3'
miRNA:   3'- gaCGCCUCUGGGUGUGG-GGa-CUGGcg -5'
10724 5' -60.2 NC_002794.1 + 195538 0.73 0.407025
Target:  5'- -gGCGGAcgccGcACCCACGCCCUgaGCCGCc -3'
miRNA:   3'- gaCGCCU----C-UGGGUGUGGGGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 90192 0.73 0.414449
Target:  5'- -cGCGGGGgcacgguGCCCGCGCCuCCgcccGCCGCg -3'
miRNA:   3'- gaCGCCUC-------UGGGUGUGG-GGac--UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 57020 0.73 0.414449
Target:  5'- gCUGCaccugaaGGAGACCUucgaggagACGCUCCUcGACCGCc -3'
miRNA:   3'- -GACG-------CCUCUGGG--------UGUGGGGA-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 18943 0.73 0.422795
Target:  5'- gUGaCGGAGACCCGCgACUCCUucaccaccucaucGACCGg -3'
miRNA:   3'- gAC-GCCUCUGGGUG-UGGGGA-------------CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 146508 0.73 0.423636
Target:  5'- -cGCGGAG-CCC-CugCUCggGACCGCg -3'
miRNA:   3'- gaCGCCUCuGGGuGugGGGa-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 36815 0.73 0.432092
Target:  5'- gCUGCGaGAGGuagcccUCCAgGCCCCgGACCGUc -3'
miRNA:   3'- -GACGC-CUCU------GGGUgUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 191527 0.72 0.449295
Target:  5'- -gGCGucGGCCCGCGCCUCccGCCGCa -3'
miRNA:   3'- gaCGCcuCUGGGUGUGGGGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 188932 0.72 0.458037
Target:  5'- -aGCGGAcaGGCCCGCugUCCgggcGugCGCa -3'
miRNA:   3'- gaCGCCU--CUGGGUGugGGGa---CugGCG- -5'
10724 5' -60.2 NC_002794.1 + 114473 0.72 0.458917
Target:  5'- -cGCaGGAGACCCACGCguaCCCgguccacgcgcgccgGACCGUc -3'
miRNA:   3'- gaCG-CCUCUGGGUGUG---GGGa--------------CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 51822 0.72 0.46687
Target:  5'- -cGUGGAGGa-CACGCCCCUGAUCa- -3'
miRNA:   3'- gaCGCCUCUggGUGUGGGGACUGGcg -5'
10724 5' -60.2 NC_002794.1 + 62338 0.72 0.46687
Target:  5'- -gGCGGAG-CCCGCGCCggcgcaCCUggucucguugGACCGCu -3'
miRNA:   3'- gaCGCCUCuGGGUGUGG------GGA----------CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.