miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 35345 0.72 0.475789
Target:  5'- -cGCGGucgAGGCCC-UGCCCCUGAC-GCg -3'
miRNA:   3'- gaCGCC---UCUGGGuGUGGGGACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 119519 0.71 0.512272
Target:  5'- -cGCGGAGccgGCCgCGgACCCCUcGuCCGCg -3'
miRNA:   3'- gaCGCCUC---UGG-GUgUGGGGA-CuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 61116 0.71 0.520642
Target:  5'- ---aGGGGACCagcucgugcucugCGCGCCCCUGcuGCCGCc -3'
miRNA:   3'- gacgCCUCUGG-------------GUGUGGGGAC--UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 24208 0.71 0.530944
Target:  5'- -cGCGGcGGCCCGCucACCCgUGuCCGUc -3'
miRNA:   3'- gaCGCCuCUGGGUG--UGGGgACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 181588 0.71 0.530944
Target:  5'- gCUGCGGGccgcGACCgGguCGCCCCguuGCCGCa -3'
miRNA:   3'- -GACGCCU----CUGGgU--GUGGGGac-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 63216 0.71 0.540373
Target:  5'- cCUGCGc-GACCUGcCGCCCCUGcgccuCCGCg -3'
miRNA:   3'- -GACGCcuCUGGGU-GUGGGGACu----GGCG- -5'
10724 5' -60.2 NC_002794.1 + 59057 0.7 0.549857
Target:  5'- cCUGCGGccuGGGCCUGCACCUCaaGACCcuGCu -3'
miRNA:   3'- -GACGCC---UCUGGGUGUGGGGa-CUGG--CG- -5'
10724 5' -60.2 NC_002794.1 + 140019 0.7 0.559393
Target:  5'- -cGCGGAGGCCgCgGC-CCCCgcgGGCgGCg -3'
miRNA:   3'- gaCGCCUCUGG-G-UGuGGGGa--CUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 59277 0.7 0.568974
Target:  5'- cCUGCuGGAGAUCCGCucGCCgCUcgacGCCGCg -3'
miRNA:   3'- -GACG-CCUCUGGGUG--UGGgGAc---UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 18195 0.7 0.568974
Target:  5'- -cGCGacGAGGCCgACGCCuCCUaACCGCc -3'
miRNA:   3'- gaCGC--CUCUGGgUGUGG-GGAcUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 187523 0.7 0.568974
Target:  5'- -cGCGGAGGaacuCCC-CGCCgCCgcGACCGCc -3'
miRNA:   3'- gaCGCCUCU----GGGuGUGG-GGa-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 144886 0.7 0.578595
Target:  5'- gUGCGGGGcgagacGCUCGCGCCgCUGGgccCCGCc -3'
miRNA:   3'- gACGCCUC------UGGGUGUGGgGACU---GGCG- -5'
10724 5' -60.2 NC_002794.1 + 79006 0.7 0.578595
Target:  5'- -cGCGGcGACuCCAuccCGCCCUcGGCCGCc -3'
miRNA:   3'- gaCGCCuCUG-GGU---GUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 8711 0.7 0.578595
Target:  5'- cCUGCcccGGG-UCCACACCCCccaGACCGUg -3'
miRNA:   3'- -GACGc--CUCuGGGUGUGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 185222 0.7 0.588251
Target:  5'- -cGCGGAGAgUCGCGCC---GACCGCc -3'
miRNA:   3'- gaCGCCUCUgGGUGUGGggaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 184487 0.7 0.588251
Target:  5'- -cGCGGGGcCCCGgACgCCCgGGCgGCg -3'
miRNA:   3'- gaCGCCUCuGGGUgUG-GGGaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 6263 0.7 0.588251
Target:  5'- -gGUGGucaccauGGCCCACGCCCCcagaUGuCUGCa -3'
miRNA:   3'- gaCGCCu------CUGGGUGUGGGG----ACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 33594 0.7 0.588251
Target:  5'- cCUGCGGcGGACgCGCAUCCCcaacuccacgGACCuGCa -3'
miRNA:   3'- -GACGCC-UCUGgGUGUGGGGa---------CUGG-CG- -5'
10724 5' -60.2 NC_002794.1 + 93966 0.7 0.597936
Target:  5'- -gGUGGAgGACUUu--UCCCUGACCGCg -3'
miRNA:   3'- gaCGCCU-CUGGGuguGGGGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 99101 0.7 0.597936
Target:  5'- -aGCGGAGugCCGugcggcaGCCCCUGGauuucuuuuucCCGUa -3'
miRNA:   3'- gaCGCCUCugGGUg------UGGGGACU-----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.