Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10724 | 5' | -60.2 | NC_002794.1 | + | 194559 | 0.67 | 0.723456 |
Target: 5'- -cGCGGAacagguGACCCACGCUCU---CCGCc -3' miRNA: 3'- gaCGCCU------CUGGGUGUGGGGacuGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 91611 | 0.67 | 0.723456 |
Target: 5'- -cGCGGccgAGGgCCACGCCgaccuCCUGcGCCGCc -3' miRNA: 3'- gaCGCC---UCUgGGUGUGG-----GGAC-UGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 36165 | 0.67 | 0.721573 |
Target: 5'- -cGCcucccccccACCCGCGCCCCgGGCCGCc -3' miRNA: 3'- gaCGccuc-----UGGGUGUGGGGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 115596 | 0.68 | 0.714013 |
Target: 5'- gCUGCGGucGACCCGCuCgCCCggcGCCGg -3' miRNA: 3'- -GACGCCu-CUGGGUGuG-GGGac-UGGCg -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 80901 | 0.68 | 0.714013 |
Target: 5'- -gGCGGcccucgacGACCCGCGCCCgCUcGACCcCg -3' miRNA: 3'- gaCGCCu-------CUGGGUGUGGG-GA-CUGGcG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 41224 | 0.68 | 0.714013 |
Target: 5'- cCUcCGGGGAuuccuCCCACGCCgC-GGCCGCc -3' miRNA: 3'- -GAcGCCUCU-----GGGUGUGGgGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 52487 | 0.68 | 0.713065 |
Target: 5'- -cGCGGAcGACCUggccaucGCGCUCaucaUGGCCGUg -3' miRNA: 3'- gaCGCCU-CUGGG-------UGUGGGg---ACUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 108395 | 0.68 | 0.711167 |
Target: 5'- -aGCGGAGgcuccggcggcggcGCCCACcacggcgcccACCCCgcGACCGg -3' miRNA: 3'- gaCGCCUC--------------UGGGUG----------UGGGGa-CUGGCg -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 49882 | 0.68 | 0.704506 |
Target: 5'- -cGUGGAGcGCCCGCAgCCCCgaaacACgGCg -3' miRNA: 3'- gaCGCCUC-UGGGUGU-GGGGac---UGgCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 34583 | 0.68 | 0.704506 |
Target: 5'- cCUGCGGcugcccgaguuGGACCCgaucccggaggaGCACcucuuccucuCCCUGACCGa -3' miRNA: 3'- -GACGCC-----------UCUGGG------------UGUG----------GGGACUGGCg -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 19328 | 0.68 | 0.694944 |
Target: 5'- -cGCuGGcGACCCGCGcgccggucacCCCCUcGCCGCc -3' miRNA: 3'- gaCG-CCuCUGGGUGU----------GGGGAcUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 47905 | 0.68 | 0.694944 |
Target: 5'- -cGCGGucccgcacGACCCAgGCCCC-GACCcCg -3' miRNA: 3'- gaCGCCu-------CUGGGUgUGGGGaCUGGcG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 72440 | 0.68 | 0.694944 |
Target: 5'- -gGCGGAGGgaccggcggcgcCCCGCGCCCggccCCGCg -3' miRNA: 3'- gaCGCCUCU------------GGGUGUGGGgacuGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 91167 | 0.68 | 0.694944 |
Target: 5'- -cGUGGAGGCCUucaaGCucCCCCUGuACCcgGCg -3' miRNA: 3'- gaCGCCUCUGGG----UGu-GGGGAC-UGG--CG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 101337 | 0.68 | 0.694944 |
Target: 5'- -gGUGGGcuaucACCaCGCGCCCgUGGCCGUg -3' miRNA: 3'- gaCGCCUc----UGG-GUGUGGGgACUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 110306 | 0.68 | 0.694944 |
Target: 5'- -cGCGGGGACUCuccgcuCGCCgCCgcgacGCCGCg -3' miRNA: 3'- gaCGCCUCUGGGu-----GUGG-GGac---UGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 183617 | 0.68 | 0.693026 |
Target: 5'- -cGCGGccGGcgccCCCGCGCCCCcgacucgagcagGGCCGCc -3' miRNA: 3'- gaCGCC--UCu---GGGUGUGGGGa-----------CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 74104 | 0.68 | 0.685335 |
Target: 5'- gCUGCGGcuGCUCAC-CCUCgagcaGGCCGCc -3' miRNA: 3'- -GACGCCucUGGGUGuGGGGa----CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 107182 | 0.68 | 0.685335 |
Target: 5'- -gGCGGAG-CCgGCGCCgCC--GCCGCc -3' miRNA: 3'- gaCGCCUCuGGgUGUGG-GGacUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 181637 | 0.68 | 0.675685 |
Target: 5'- -gGCGGAG-CCCGgGCUCCgggaagaaaACCGCg -3' miRNA: 3'- gaCGCCUCuGGGUgUGGGGac-------UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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