miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 6047 0.73 0.390828
Target:  5'- -aGCGGAGACUCugaacgACACCcucuaCCUGAUCGCc -3'
miRNA:   3'- gaCGCCUCUGGG------UGUGG-----GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 6263 0.7 0.588251
Target:  5'- -gGUGGucaccauGGCCCACGCCCCcagaUGuCUGCa -3'
miRNA:   3'- gaCGCCu------CUGGGUGUGGGG----ACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 8711 0.7 0.578595
Target:  5'- cCUGCcccGGG-UCCACACCCCccaGACCGUg -3'
miRNA:   3'- -GACGc--CUCuGGGUGUGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 12414 0.66 0.812676
Target:  5'- -cGCGGAcGGCgCGCGCCgaCUGGCaGCu -3'
miRNA:   3'- gaCGCCU-CUGgGUGUGGg-GACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 12887 0.69 0.630996
Target:  5'- aUGcCGGAccacGACCCGCucgacugggccgaguACCgCCUGGCCGUc -3'
miRNA:   3'- gAC-GCCU----CUGGGUG---------------UGG-GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 13729 0.67 0.769449
Target:  5'- gUGCGGAc-CCaCACGCUCCcGGCCGg -3'
miRNA:   3'- gACGCCUcuGG-GUGUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 14178 0.66 0.820906
Target:  5'- cCUGCGccuccGAGAcgucagcguCCCG-GCCCgCUGGCCGCc -3'
miRNA:   3'- -GACGC-----CUCU---------GGGUgUGGG-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 14498 0.66 0.812676
Target:  5'- -gGCGGcGGCCCGCGCUCgCgGcgcucguggcGCCGCu -3'
miRNA:   3'- gaCGCCuCUGGGUGUGGG-GaC----------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 16312 0.69 0.617367
Target:  5'- -cGCGGccggcuGGAUCCcCcuGCCCCUGGCCGg -3'
miRNA:   3'- gaCGCC------UCUGGGuG--UGGGGACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 17949 0.66 0.795778
Target:  5'- -gGCGGccACCCGCGacucgCCCgGGCCGUg -3'
miRNA:   3'- gaCGCCucUGGGUGUg----GGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 18195 0.7 0.568974
Target:  5'- -cGCGacGAGGCCgACGCCuCCUaACCGCc -3'
miRNA:   3'- gaCGC--CUCUGGgUGUGG-GGAcUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 18891 0.66 0.820906
Target:  5'- -cGCGGAGcgucACCC-CuCCCC-GACgGCg -3'
miRNA:   3'- gaCGCCUC----UGGGuGuGGGGaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 18943 0.73 0.422795
Target:  5'- gUGaCGGAGACCCGCgACUCCUucaccaccucaucGACCGg -3'
miRNA:   3'- gAC-GCCUCUGGGUG-UGGGGA-------------CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 19328 0.68 0.694944
Target:  5'- -cGCuGGcGACCCGCGcgccggucacCCCCUcGCCGCc -3'
miRNA:   3'- gaCG-CCuCUGGGUGU----------GGGGAcUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 23974 0.66 0.82009
Target:  5'- -aGCGGcgAGGCCgGCGCCaccgucgcuccguCCgacgGGCCGCc -3'
miRNA:   3'- gaCGCC--UCUGGgUGUGG-------------GGa---CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 24208 0.71 0.530944
Target:  5'- -cGCGGcGGCCCGCucACCCgUGuCCGUc -3'
miRNA:   3'- gaCGCCuCUGGGUG--UGGGgACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 26086 0.67 0.732829
Target:  5'- -cGCGGGGcagcGCCgACgGCCCCggcGAUCGCc -3'
miRNA:   3'- gaCGCCUC----UGGgUG-UGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 32166 0.74 0.344835
Target:  5'- -aGCGGuGGCCCGCcugGCCCCgGucCCGCa -3'
miRNA:   3'- gaCGCCuCUGGGUG---UGGGGaCu-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 33147 0.67 0.732829
Target:  5'- gCUGCGG-GACCCGa--CCgUGuuCCGCa -3'
miRNA:   3'- -GACGCCuCUGGGUgugGGgACu-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 33594 0.7 0.588251
Target:  5'- cCUGCGGcGGACgCGCAUCCCcaacuccacgGACCuGCa -3'
miRNA:   3'- -GACGCC-UCUGgGUGUGGGGa---------CUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.