miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 34583 0.68 0.704506
Target:  5'- cCUGCGGcugcccgaguuGGACCCgaucccggaggaGCACcucuuccucuCCCUGACCGa -3'
miRNA:   3'- -GACGCC-----------UCUGGG------------UGUG----------GGGACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 34999 0.66 0.810178
Target:  5'- gCUGCGGGcccGGCacuauguacagcaaCCGC-CUCCUGAuCCGCg -3'
miRNA:   3'- -GACGCCU---CUG--------------GGUGuGGGGACU-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 35345 0.72 0.475789
Target:  5'- -cGCGGucgAGGCCC-UGCCCCUGAC-GCg -3'
miRNA:   3'- gaCGCC---UCUGGGuGUGGGGACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 35806 0.67 0.751328
Target:  5'- cCUGCGcccccGGACCCGguUUCCgGGCCGCc -3'
miRNA:   3'- -GACGCc----UCUGGGUguGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 36165 0.67 0.721573
Target:  5'- -cGCcucccccccACCCGCGCCCCgGGCCGCc -3'
miRNA:   3'- gaCGccuc-----UGGGUGUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 36815 0.73 0.432092
Target:  5'- gCUGCGaGAGGuagcccUCCAgGCCCCgGACCGUc -3'
miRNA:   3'- -GACGC-CUCU------GGGUgUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 36858 0.68 0.666003
Target:  5'- gUGCGGAGACC---GCCaCUGcaGCCGCg -3'
miRNA:   3'- gACGCCUCUGGgugUGGgGAC--UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 41224 0.68 0.714013
Target:  5'- cCUcCGGGGAuuccuCCCACGCCgC-GGCCGCc -3'
miRNA:   3'- -GAcGCCUCU-----GGGUGUGGgGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 42047 0.67 0.769449
Target:  5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3'
miRNA:   3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 44681 0.67 0.769449
Target:  5'- -aGCGccaucguccAGACCCAcCGCCgCCcGGCCGCg -3'
miRNA:   3'- gaCGCc--------UCUGGGU-GUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 47905 0.68 0.694944
Target:  5'- -cGCGGucccgcacGACCCAgGCCCC-GACCcCg -3'
miRNA:   3'- gaCGCCu-------CUGGGUgUGGGGaCUGGcG- -5'
10724 5' -60.2 NC_002794.1 + 49882 0.68 0.704506
Target:  5'- -cGUGGAGcGCCCGCAgCCCCgaaacACgGCg -3'
miRNA:   3'- gaCGCCUC-UGGGUGU-GGGGac---UGgCG- -5'
10724 5' -60.2 NC_002794.1 + 50432 0.69 0.627101
Target:  5'- -cGCGGuGGCCacgaucugGCACCCgUG-CCGCa -3'
miRNA:   3'- gaCGCCuCUGGg-------UGUGGGgACuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 51822 0.72 0.46687
Target:  5'- -cGUGGAGGa-CACGCCCCUGAUCa- -3'
miRNA:   3'- gaCGCCUCUggGUGUGGGGACUGGcg -5'
10724 5' -60.2 NC_002794.1 + 51899 0.69 0.656297
Target:  5'- gCUGC----ACCCGCACCUC-GACCGCu -3'
miRNA:   3'- -GACGccucUGGGUGUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 52487 0.68 0.713065
Target:  5'- -cGCGGAcGACCUggccaucGCGCUCaucaUGGCCGUg -3'
miRNA:   3'- gaCGCCU-CUGGG-------UGUGGGg---ACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 53723 0.69 0.617367
Target:  5'- -cGgGGuGGACCCGCGCCaUCgccGGCCGCc -3'
miRNA:   3'- gaCgCC-UCUGGGUGUGG-GGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 57020 0.73 0.414449
Target:  5'- gCUGCaccugaaGGAGACCUucgaggagACGCUCCUcGACCGCc -3'
miRNA:   3'- -GACG-------CCUCUGGG--------UGUGGGGA-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 57197 0.68 0.664064
Target:  5'- gCUGCGcGAGcacagccACCUGCACCgccagagCCUGACgCGCg -3'
miRNA:   3'- -GACGC-CUC-------UGGGUGUGG-------GGACUG-GCG- -5'
10724 5' -60.2 NC_002794.1 + 58076 0.69 0.627101
Target:  5'- -gGCGGGacgggcGGCCCgGCGCCCgCgcucGACCGCu -3'
miRNA:   3'- gaCGCCU------CUGGG-UGUGGG-Ga---CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.