miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 58438 0.76 0.277128
Target:  5'- -cGCcGAGGCCaCGCugCgCCUGGCCGCg -3'
miRNA:   3'- gaCGcCUCUGG-GUGugG-GGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 59057 0.7 0.549857
Target:  5'- cCUGCGGccuGGGCCUGCACCUCaaGACCcuGCu -3'
miRNA:   3'- -GACGCC---UCUGGGUGUGGGGa-CUGG--CG- -5'
10724 5' -60.2 NC_002794.1 + 59277 0.7 0.568974
Target:  5'- cCUGCuGGAGAUCCGCucGCCgCUcgacGCCGCg -3'
miRNA:   3'- -GACG-CCUCUGGGUG--UGGgGAc---UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 59391 0.66 0.795778
Target:  5'- gCUGCGG--GCCUACGCCUac-GCCGUg -3'
miRNA:   3'- -GACGCCucUGGGUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 60180 0.69 0.635865
Target:  5'- -cGCGGGcgcucGGCCUGCcucuucagcgucgACCCCUacGACCGCg -3'
miRNA:   3'- gaCGCCU-----CUGGGUG-------------UGGGGA--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 61116 0.71 0.520642
Target:  5'- ---aGGGGACCagcucgugcucugCGCGCCCCUGcuGCCGCc -3'
miRNA:   3'- gacgCCUCUGG-------------GUGUGGGGAC--UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 62338 0.72 0.46687
Target:  5'- -gGCGGAG-CCCGCGCCggcgcaCCUggucucguugGACCGCu -3'
miRNA:   3'- gaCGCCUCuGGGUGUGG------GGA----------CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 63216 0.71 0.540373
Target:  5'- cCUGCGc-GACCUGcCGCCCCUGcgccuCCGCg -3'
miRNA:   3'- -GACGCcuCUGGGU-GUGGGGACu----GGCG- -5'
10724 5' -60.2 NC_002794.1 + 64606 0.69 0.611531
Target:  5'- --cCGGAggacgucuucgucccGACCCGCGCCCCcGAgCGCc -3'
miRNA:   3'- gacGCCU---------------CUGGGUGUGGGGaCUgGCG- -5'
10724 5' -60.2 NC_002794.1 + 66251 0.67 0.769449
Target:  5'- uUGCGGcGACCCGuccgGCCCCguaGACgaGCg -3'
miRNA:   3'- gACGCCuCUGGGUg---UGGGGa--CUGg-CG- -5'
10724 5' -60.2 NC_002794.1 + 68233 0.66 0.812676
Target:  5'- cCUGCGGAcGCa-GCGCCCC-GACCu- -3'
miRNA:   3'- -GACGCCUcUGggUGUGGGGaCUGGcg -5'
10724 5' -60.2 NC_002794.1 + 68429 0.66 0.787125
Target:  5'- --aCGGuGGCCCAcCACCgCUGGuuCCGCc -3'
miRNA:   3'- gacGCCuCUGGGU-GUGGgGACU--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 68685 0.66 0.812676
Target:  5'- -cGUGGccGCCC-CACCCCaGucuCCGCg -3'
miRNA:   3'- gaCGCCucUGGGuGUGGGGaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 68915 0.67 0.76044
Target:  5'- -cGCGG-GGCUCGCggcguccucgucGCCCgCgGGCCGCg -3'
miRNA:   3'- gaCGCCuCUGGGUG------------UGGG-GaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 70203 0.69 0.656297
Target:  5'- -aGCGGAGAUCCAgcuCGCCCg-GACgGUc -3'
miRNA:   3'- gaCGCCUCUGGGU---GUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 70232 0.67 0.769449
Target:  5'- -gGCGGGcGGCCgGcCGCCCCgcagcaGACgCGCa -3'
miRNA:   3'- gaCGCCU-CUGGgU-GUGGGGa-----CUG-GCG- -5'
10724 5' -60.2 NC_002794.1 + 72440 0.68 0.694944
Target:  5'- -gGCGGAGGgaccggcggcgcCCCGCGCCCggccCCGCg -3'
miRNA:   3'- gaCGCCUCU------------GGGUGUGGGgacuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 73524 0.67 0.769449
Target:  5'- gUGCuGGAGAUCCACcaggACCCCgucCCGa -3'
miRNA:   3'- gACG-CCUCUGGGUG----UGGGGacuGGCg -5'
10724 5' -60.2 NC_002794.1 + 74104 0.68 0.685335
Target:  5'- gCUGCGGcuGCUCAC-CCUCgagcaGGCCGCc -3'
miRNA:   3'- -GACGCCucUGGGUGuGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 76107 0.81 0.136094
Target:  5'- -cGCGGAucacuccGACCCGC-CCUCUGACCGCc -3'
miRNA:   3'- gaCGCCU-------CUGGGUGuGGGGACUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.