miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 79006 0.7 0.578595
Target:  5'- -cGCGGcGACuCCAuccCGCCCUcGGCCGCc -3'
miRNA:   3'- gaCGCCuCUG-GGU---GUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 80458 0.69 0.627101
Target:  5'- -cGuCGGcGGCCCGCugCCCgucuuCCGCg -3'
miRNA:   3'- gaC-GCCuCUGGGUGugGGGacu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 80901 0.68 0.714013
Target:  5'- -gGCGGcccucgacGACCCGCGCCCgCUcGACCcCg -3'
miRNA:   3'- gaCGCCu-------CUGGGUGUGGG-GA-CUGGcG- -5'
10724 5' -60.2 NC_002794.1 + 84966 0.74 0.344835
Target:  5'- -cGCGGAu-CCUugGCCCC-GGCCGCg -3'
miRNA:   3'- gaCGCCUcuGGGugUGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 86875 0.66 0.778346
Target:  5'- -cGCGGcuaggcaguAGGCCCG-AUCCCggcggGGCCGCc -3'
miRNA:   3'- gaCGCC---------UCUGGGUgUGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 90192 0.73 0.414449
Target:  5'- -cGCGGGGgcacgguGCCCGCGCCuCCgcccGCCGCg -3'
miRNA:   3'- gaCGCCUC-------UGGGUGUGG-GGac--UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 91167 0.68 0.694944
Target:  5'- -cGUGGAGGCCUucaaGCucCCCCUGuACCcgGCg -3'
miRNA:   3'- gaCGCCUCUGGG----UGu-GGGGAC-UGG--CG- -5'
10724 5' -60.2 NC_002794.1 + 91611 0.67 0.723456
Target:  5'- -cGCGGccgAGGgCCACGCCgaccuCCUGcGCCGCc -3'
miRNA:   3'- gaCGCC---UCUgGGUGUGG-----GGAC-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 93359 0.66 0.811845
Target:  5'- gUGCcGcAGAaccaccucaacuuCCCGCACCUgCUGGCCGCc -3'
miRNA:   3'- gACGcC-UCU-------------GGGUGUGGG-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 93966 0.7 0.597936
Target:  5'- -gGUGGAgGACUUu--UCCCUGACCGCg -3'
miRNA:   3'- gaCGCCU-CUGGGuguGGGGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 99101 0.7 0.597936
Target:  5'- -aGCGGAGugCCGugcggcaGCCCCUGGauuucuuuuucCCGUa -3'
miRNA:   3'- gaCGCCUCugGGUg------UGGGGACU-----------GGCG- -5'
10724 5' -60.2 NC_002794.1 + 99550 0.67 0.732829
Target:  5'- -cGCGGAaACCgCGCGCgCCCU--CCGCg -3'
miRNA:   3'- gaCGCCUcUGG-GUGUG-GGGAcuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100548 0.66 0.812676
Target:  5'- -aGCGGGcGGCCUu--CCCCgUGGCCGa -3'
miRNA:   3'- gaCGCCU-CUGGGuguGGGG-ACUGGCg -5'
10724 5' -60.2 NC_002794.1 + 100774 0.67 0.769449
Target:  5'- -cGCGGAGua-CACGCgCCUGcgguucgcgGCCGCu -3'
miRNA:   3'- gaCGCCUCuggGUGUGgGGAC---------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100828 0.67 0.732829
Target:  5'- -gGCGGGGGCCgGCAgCCggGcuuCCGCa -3'
miRNA:   3'- gaCGCCUCUGGgUGUgGGgaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 101258 0.69 0.627101
Target:  5'- -aGCGGGGGgCCGC-CCCCggcgccggUGGCgGCg -3'
miRNA:   3'- gaCGCCUCUgGGUGuGGGG--------ACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 101337 0.68 0.694944
Target:  5'- -gGUGGGcuaucACCaCGCGCCCgUGGCCGUg -3'
miRNA:   3'- gaCGCCUc----UGG-GUGUGGGgACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 103830 0.67 0.723456
Target:  5'- -cGUGGAGucgcagGCCUugACCaCCgagcgGGCCGCc -3'
miRNA:   3'- gaCGCCUC------UGGGugUGG-GGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 104449 0.66 0.778346
Target:  5'- -cGCGGGcGGCCCGaGCCCg-GGCgGCg -3'
miRNA:   3'- gaCGCCU-CUGGGUgUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 107098 0.67 0.768553
Target:  5'- -gGCGGGggugugucgcugcGAgCCGCGCUUCUuuGACCGCg -3'
miRNA:   3'- gaCGCCU-------------CUgGGUGUGGGGA--CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.