miRNA display CGI


Results 81 - 100 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 107182 0.68 0.685335
Target:  5'- -gGCGGAG-CCgGCGCCgCC--GCCGCc -3'
miRNA:   3'- gaCGCCUCuGGgUGUGG-GGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 108395 0.68 0.711167
Target:  5'- -aGCGGAGgcuccggcggcggcGCCCACcacggcgcccACCCCgcGACCGg -3'
miRNA:   3'- gaCGCCUC--------------UGGGUG----------UGGGGa-CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 110306 0.68 0.694944
Target:  5'- -cGCGGGGACUCuccgcuCGCCgCCgcgacGCCGCg -3'
miRNA:   3'- gaCGCCUCUGGGu-----GUGG-GGac---UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 112553 0.67 0.751328
Target:  5'- -aGCGG-GGCUCGCcgccgGCCaCCcGGCCGCu -3'
miRNA:   3'- gaCGCCuCUGGGUG-----UGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 113189 0.68 0.666003
Target:  5'- -cGCGGAGGCgCCucCGCCgCCgccACCGCc -3'
miRNA:   3'- gaCGCCUCUG-GGu-GUGG-GGac-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 114473 0.72 0.458917
Target:  5'- -cGCaGGAGACCCACGCguaCCCgguccacgcgcgccgGACCGUc -3'
miRNA:   3'- gaCG-CCUCUGGGUGUG---GGGa--------------CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 114813 0.69 0.656297
Target:  5'- --cCGGAGGCCCGCGCgCUCUccGGCgGCc -3'
miRNA:   3'- gacGCCUCUGGGUGUG-GGGA--CUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 115001 0.69 0.656297
Target:  5'- -cGCGGAGcagcuCUCGCACCC---GCCGCg -3'
miRNA:   3'- gaCGCCUCu----GGGUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 115596 0.68 0.714013
Target:  5'- gCUGCGGucGACCCGCuCgCCCggcGCCGg -3'
miRNA:   3'- -GACGCCu-CUGGGUGuG-GGGac-UGGCg -5'
10724 5' -60.2 NC_002794.1 + 115982 0.66 0.778346
Target:  5'- -gGaCGGGGAgCgGCGCCgCggaGACCGCg -3'
miRNA:   3'- gaC-GCCUCUgGgUGUGGgGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 116147 0.66 0.812676
Target:  5'- -gGCGGccaGGGCCUGCACCgCCU--CCGUg -3'
miRNA:   3'- gaCGCC---UCUGGGUGUGG-GGAcuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 119519 0.71 0.512272
Target:  5'- -cGCGGAGccgGCCgCGgACCCCUcGuCCGCg -3'
miRNA:   3'- gaCGCCUC---UGG-GUgUGGGGA-CuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 123484 0.67 0.76044
Target:  5'- gCUGCGGAccagcgugGACCUguGCAUCgCCgGGCUGCc -3'
miRNA:   3'- -GACGCCU--------CUGGG--UGUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 126318 0.74 0.367337
Target:  5'- -aGCGGAgcguGACCCGC-UCgCUGACCGCc -3'
miRNA:   3'- gaCGCCU----CUGGGUGuGGgGACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 131687 0.69 0.646573
Target:  5'- -gGCGGucuuAGaACCCAgACCCC-GACCGg -3'
miRNA:   3'- gaCGCC----UC-UGGGUgUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 140019 0.7 0.559393
Target:  5'- -cGCGGAGGCCgCgGC-CCCCgcgGGCgGCg -3'
miRNA:   3'- gaCGCCUCUGG-G-UGuGGGGa--CUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 140881 0.66 0.778346
Target:  5'- -gGCcGAcuGAUCCugACCCUgucGACCGCg -3'
miRNA:   3'- gaCGcCU--CUGGGugUGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 144886 0.7 0.578595
Target:  5'- gUGCGGGGcgagacGCUCGCGCCgCUGGgccCCGCc -3'
miRNA:   3'- gACGCCUC------UGGGUGUGGgGACU---GGCG- -5'
10724 5' -60.2 NC_002794.1 + 146508 0.73 0.423636
Target:  5'- -cGCGGAG-CCC-CugCUCggGACCGCg -3'
miRNA:   3'- gaCGCCUCuGGGuGugGGGa-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 148814 0.69 0.627101
Target:  5'- -cGCGGAGAUCUggagACugCCCcgcGACCGg -3'
miRNA:   3'- gaCGCCUCUGGG----UGugGGGa--CUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.