miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 195538 0.73 0.407025
Target:  5'- -gGCGGAcgccGcACCCACGCCCUgaGCCGCc -3'
miRNA:   3'- gaCGCCU----C-UGGGUGUGGGGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 194559 0.67 0.723456
Target:  5'- -cGCGGAacagguGACCCACGCUCU---CCGCc -3'
miRNA:   3'- gaCGCCU------CUGGGUGUGGGGacuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 191527 0.72 0.449295
Target:  5'- -gGCGucGGCCCGCGCCUCccGCCGCa -3'
miRNA:   3'- gaCGCcuCUGGGUGUGGGGacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 191363 0.66 0.804298
Target:  5'- -aGuCGGGGACgggccggacccuCCGCGCCCgC-GGCCGCc -3'
miRNA:   3'- gaC-GCCUCUG------------GGUGUGGG-GaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 190095 0.69 0.646573
Target:  5'- -cGCGcAGcuCCCACGCCCCgccGuCCGCg -3'
miRNA:   3'- gaCGCcUCu-GGGUGUGGGGa--CuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 188932 0.72 0.458037
Target:  5'- -aGCGGAcaGGCCCGCugUCCgggcGugCGCa -3'
miRNA:   3'- gaCGCCU--CUGGGUGugGGGa---CugGCG- -5'
10724 5' -60.2 NC_002794.1 + 187902 0.67 0.769449
Target:  5'- -cGCGGuGccgcucGCCCGCcggGCCCCgccgcGACCGUc -3'
miRNA:   3'- gaCGCCuC------UGGGUG---UGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 187523 0.7 0.568974
Target:  5'- -cGCGGAGGaacuCCC-CGCCgCCgcGACCGCc -3'
miRNA:   3'- gaCGCCUCU----GGGuGUGG-GGa-CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 187194 0.66 0.812676
Target:  5'- -aGcCGGAuGACCaGCACCCC-GACCa- -3'
miRNA:   3'- gaC-GCCU-CUGGgUGUGGGGaCUGGcg -5'
10724 5' -60.2 NC_002794.1 + 187055 0.66 0.804298
Target:  5'- --cCGGAG-CCCGCGgCCCgccagGuGCCGCa -3'
miRNA:   3'- gacGCCUCuGGGUGUgGGGa----C-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 186028 0.69 0.627101
Target:  5'- -gGCccGGACCCGgGCCCCggcUGGCCGUc -3'
miRNA:   3'- gaCGccUCUGGGUgUGGGG---ACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 185796 0.73 0.398874
Target:  5'- -cGCGGGGACCCACAUCgCCggGAUCu- -3'
miRNA:   3'- gaCGCCUCUGGGUGUGG-GGa-CUGGcg -5'
10724 5' -60.2 NC_002794.1 + 185222 0.7 0.588251
Target:  5'- -cGCGGAGAgUCGCGCC---GACCGCc -3'
miRNA:   3'- gaCGCCUCUgGGUGUGGggaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 184487 0.7 0.588251
Target:  5'- -cGCGGGGcCCCGgACgCCCgGGCgGCg -3'
miRNA:   3'- gaCGCCUCuGGGUgUG-GGGaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 183617 0.68 0.693026
Target:  5'- -cGCGGccGGcgccCCCGCGCCCCcgacucgagcagGGCCGCc -3'
miRNA:   3'- gaCGCC--UCu---GGGUGUGGGGa-----------CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 183438 0.69 0.636839
Target:  5'- -aGCGG-GACCgGCGCCCgccACCGCc -3'
miRNA:   3'- gaCGCCuCUGGgUGUGGGgacUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 181637 0.68 0.675685
Target:  5'- -gGCGGAG-CCCGgGCUCCgggaagaaaACCGCg -3'
miRNA:   3'- gaCGCCUCuGGGUgUGGGGac-------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 181588 0.71 0.530944
Target:  5'- gCUGCGGGccgcGACCgGguCGCCCCguuGCCGCa -3'
miRNA:   3'- -GACGCCU----CUGGgU--GUGGGGac-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 180873 0.68 0.666003
Target:  5'- -gGCGGcGGAUCCgGCGCgCCCggucucGGCCGCg -3'
miRNA:   3'- gaCGCC-UCUGGG-UGUG-GGGa-----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 177128 0.66 0.804298
Target:  5'- -aGCuGGAGuuCCuguUGCCCCUGauucgGCCGCa -3'
miRNA:   3'- gaCG-CCUCugGGu--GUGGGGAC-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.