miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 68233 0.66 0.812676
Target:  5'- cCUGCGGAcGCa-GCGCCCC-GACCu- -3'
miRNA:   3'- -GACGCCUcUGggUGUGGGGaCUGGcg -5'
10724 5' -60.2 NC_002794.1 + 23974 0.66 0.82009
Target:  5'- -aGCGGcgAGGCCgGCGCCaccgucgcuccguCCgacgGGCCGCc -3'
miRNA:   3'- gaCGCC--UCUGGgUGUGG-------------GGa---CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 12414 0.66 0.812676
Target:  5'- -cGCGGAcGGCgCGCGCCgaCUGGCaGCu -3'
miRNA:   3'- gaCGCCU-CUGgGUGUGGg-GACUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 68685 0.66 0.812676
Target:  5'- -cGUGGccGCCC-CACCCCaGucuCCGCg -3'
miRNA:   3'- gaCGCCucUGGGuGUGGGGaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 18891 0.66 0.820906
Target:  5'- -cGCGGAGcgucACCC-CuCCCC-GACgGCg -3'
miRNA:   3'- gaCGCCUC----UGGGuGuGGGGaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 177128 0.66 0.804298
Target:  5'- -aGCuGGAGuuCCuguUGCCCCUGauucgGCCGCa -3'
miRNA:   3'- gaCG-CCUCugGGu--GUGGGGAC-----UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 68429 0.66 0.787125
Target:  5'- --aCGGuGGCCCAcCACCgCUGGuuCCGCc -3'
miRNA:   3'- gacGCCuCUGGGU-GUGGgGACU--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 42047 0.67 0.769449
Target:  5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3'
miRNA:   3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 13729 0.67 0.769449
Target:  5'- gUGCGGAc-CCaCACGCUCCcGGCCGg -3'
miRNA:   3'- gACGCCUcuGG-GUGUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 66251 0.67 0.769449
Target:  5'- uUGCGGcGACCCGuccgGCCCCguaGACgaGCg -3'
miRNA:   3'- gACGCCuCUGGGUg---UGGGGa--CUGg-CG- -5'
10724 5' -60.2 NC_002794.1 + 73524 0.67 0.769449
Target:  5'- gUGCuGGAGAUCCACcaggACCCCgucCCGa -3'
miRNA:   3'- gACG-CCUCUGGGUG----UGGGGacuGGCg -5'
10724 5' -60.2 NC_002794.1 + 70232 0.67 0.769449
Target:  5'- -gGCGGGcGGCCgGcCGCCCCgcagcaGACgCGCa -3'
miRNA:   3'- gaCGCCU-CUGGgU-GUGGGGa-----CUG-GCG- -5'
10724 5' -60.2 NC_002794.1 + 187902 0.67 0.769449
Target:  5'- -cGCGGuGccgcucGCCCGCcggGCCCCgccgcGACCGUc -3'
miRNA:   3'- gaCGCCuC------UGGGUG---UGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100774 0.67 0.769449
Target:  5'- -cGCGGAGua-CACGCgCCUGcgguucgcgGCCGCu -3'
miRNA:   3'- gaCGCCUCuggGUGUGgGGAC---------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 86875 0.66 0.778346
Target:  5'- -cGCGGcuaggcaguAGGCCCG-AUCCCggcggGGCCGCc -3'
miRNA:   3'- gaCGCC---------UCUGGGUgUGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 115982 0.66 0.778346
Target:  5'- -gGaCGGGGAgCgGCGCCgCggaGACCGCg -3'
miRNA:   3'- gaC-GCCUCUgGgUGUGGgGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 104449 0.66 0.778346
Target:  5'- -cGCGGGcGGCCCGaGCCCg-GGCgGCg -3'
miRNA:   3'- gaCGCCU-CUGGGUgUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 140881 0.66 0.778346
Target:  5'- -gGCcGAcuGAUCCugACCCUgucGACCGCg -3'
miRNA:   3'- gaCGcCU--CUGGGugUGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 17949 0.66 0.795778
Target:  5'- -gGCGGccACCCGCGacucgCCCgGGCCGUg -3'
miRNA:   3'- gaCGCCucUGGGUGUg----GGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 59391 0.66 0.795778
Target:  5'- gCUGCGG--GCCUACGCCUac-GCCGUg -3'
miRNA:   3'- -GACGCCucUGGGUGUGGGgacUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.