miRNA display CGI


Results 61 - 80 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 104449 0.66 0.778346
Target:  5'- -cGCGGGcGGCCCGaGCCCg-GGCgGCg -3'
miRNA:   3'- gaCGCCU-CUGGGUgUGGGgaCUGgCG- -5'
10724 5' -60.2 NC_002794.1 + 115982 0.66 0.778346
Target:  5'- -gGaCGGGGAgCgGCGCCgCggaGACCGCg -3'
miRNA:   3'- gaC-GCCUCUgGgUGUGGgGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 68915 0.67 0.76044
Target:  5'- -cGCGG-GGCUCGCggcguccucgucGCCCgCgGGCCGCg -3'
miRNA:   3'- gaCGCCuCUGGGUG------------UGGG-GaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 35806 0.67 0.751328
Target:  5'- cCUGCGcccccGGACCCGguUUCCgGGCCGCc -3'
miRNA:   3'- -GACGCc----UCUGGGUguGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 123484 0.67 0.76044
Target:  5'- gCUGCGGAccagcgugGACCUguGCAUCgCCgGGCUGCc -3'
miRNA:   3'- -GACGCCU--------CUGGG--UGUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100828 0.67 0.732829
Target:  5'- -gGCGGGGGCCgGCAgCCggGcuuCCGCa -3'
miRNA:   3'- gaCGCCUCUGGgUGUgGGgaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 26086 0.67 0.732829
Target:  5'- -cGCGGGGcagcGCCgACgGCCCCggcGAUCGCc -3'
miRNA:   3'- gaCGCCUC----UGGgUG-UGGGGa--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 99550 0.67 0.732829
Target:  5'- -cGCGGAaACCgCGCGCgCCCU--CCGCg -3'
miRNA:   3'- gaCGCCUcUGG-GUGUG-GGGAcuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 112553 0.67 0.751328
Target:  5'- -aGCGG-GGCUCGCcgccgGCCaCCcGGCCGCu -3'
miRNA:   3'- gaCGCCuCUGGGUG-----UGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 33147 0.67 0.732829
Target:  5'- gCUGCGG-GACCCGa--CCgUGuuCCGCa -3'
miRNA:   3'- -GACGCCuCUGGGUgugGGgACu-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 44681 0.67 0.769449
Target:  5'- -aGCGccaucguccAGACCCAcCGCCgCCcGGCCGCg -3'
miRNA:   3'- gaCGCc--------UCUGGGU-GUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 107098 0.67 0.768553
Target:  5'- -gGCGGGggugugucgcugcGAgCCGCGCUUCUuuGACCGCg -3'
miRNA:   3'- gaCGCCU-------------CUgGGUGUGGGGA--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 86875 0.66 0.778346
Target:  5'- -cGCGGcuaggcaguAGGCCCG-AUCCCggcggGGCCGCc -3'
miRNA:   3'- gaCGCC---------UCUGGGUgUGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100774 0.67 0.769449
Target:  5'- -cGCGGAGua-CACGCgCCUGcgguucgcgGCCGCu -3'
miRNA:   3'- gaCGCCUCuggGUGUGgGGAC---------UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 187902 0.67 0.769449
Target:  5'- -cGCGGuGccgcucGCCCGCcggGCCCCgccgcGACCGUc -3'
miRNA:   3'- gaCGCCuC------UGGGUG---UGGGGa----CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 70232 0.67 0.769449
Target:  5'- -gGCGGGcGGCCgGcCGCCCCgcagcaGACgCGCa -3'
miRNA:   3'- gaCGCCU-CUGGgU-GUGGGGa-----CUG-GCG- -5'
10724 5' -60.2 NC_002794.1 + 73524 0.67 0.769449
Target:  5'- gUGCuGGAGAUCCACcaggACCCCgucCCGa -3'
miRNA:   3'- gACG-CCUCUGGGUG----UGGGGacuGGCg -5'
10724 5' -60.2 NC_002794.1 + 66251 0.67 0.769449
Target:  5'- uUGCGGcGACCCGuccgGCCCCguaGACgaGCg -3'
miRNA:   3'- gACGCCuCUGGGUg---UGGGGa--CUGg-CG- -5'
10724 5' -60.2 NC_002794.1 + 13729 0.67 0.769449
Target:  5'- gUGCGGAc-CCaCACGCUCCcGGCCGg -3'
miRNA:   3'- gACGCCUcuGG-GUGUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 42047 0.67 0.769449
Target:  5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3'
miRNA:   3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.