miRNA display CGI


Results 81 - 100 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10724 5' -60.2 NC_002794.1 + 91611 0.67 0.723456
Target:  5'- -cGCGGccgAGGgCCACGCCgaccuCCUGcGCCGCc -3'
miRNA:   3'- gaCGCC---UCUgGGUGUGG-----GGAC-UGGCG- -5'
10724 5' -60.2 NC_002794.1 + 41224 0.68 0.714013
Target:  5'- cCUcCGGGGAuuccuCCCACGCCgC-GGCCGCc -3'
miRNA:   3'- -GAcGCCUCU-----GGGUGUGGgGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 80901 0.68 0.714013
Target:  5'- -gGCGGcccucgacGACCCGCGCCCgCUcGACCcCg -3'
miRNA:   3'- gaCGCCu-------CUGGGUGUGGG-GA-CUGGcG- -5'
10724 5' -60.2 NC_002794.1 + 52487 0.68 0.713065
Target:  5'- -cGCGGAcGACCUggccaucGCGCUCaucaUGGCCGUg -3'
miRNA:   3'- gaCGCCU-CUGGG-------UGUGGGg---ACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 115596 0.68 0.714013
Target:  5'- gCUGCGGucGACCCGCuCgCCCggcGCCGg -3'
miRNA:   3'- -GACGCCu-CUGGGUGuG-GGGac-UGGCg -5'
10724 5' -60.2 NC_002794.1 + 108395 0.68 0.711167
Target:  5'- -aGCGGAGgcuccggcggcggcGCCCACcacggcgcccACCCCgcGACCGg -3'
miRNA:   3'- gaCGCCUC--------------UGGGUG----------UGGGGa-CUGGCg -5'
10724 5' -60.2 NC_002794.1 + 49882 0.68 0.704506
Target:  5'- -cGUGGAGcGCCCGCAgCCCCgaaacACgGCg -3'
miRNA:   3'- gaCGCCUC-UGGGUGU-GGGGac---UGgCG- -5'
10724 5' -60.2 NC_002794.1 + 33147 0.67 0.732829
Target:  5'- gCUGCGG-GACCCGa--CCgUGuuCCGCa -3'
miRNA:   3'- -GACGCCuCUGGGUgugGGgACu-GGCG- -5'
10724 5' -60.2 NC_002794.1 + 112553 0.67 0.751328
Target:  5'- -aGCGG-GGCUCGCcgccgGCCaCCcGGCCGCu -3'
miRNA:   3'- gaCGCCuCUGGGUG-----UGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 99550 0.67 0.732829
Target:  5'- -cGCGGAaACCgCGCGCgCCCU--CCGCg -3'
miRNA:   3'- gaCGCCUcUGG-GUGUG-GGGAcuGGCG- -5'
10724 5' -60.2 NC_002794.1 + 66251 0.67 0.769449
Target:  5'- uUGCGGcGACCCGuccgGCCCCguaGACgaGCg -3'
miRNA:   3'- gACGCCuCUGGGUg---UGGGGa--CUGg-CG- -5'
10724 5' -60.2 NC_002794.1 + 13729 0.67 0.769449
Target:  5'- gUGCGGAc-CCaCACGCUCCcGGCCGg -3'
miRNA:   3'- gACGCCUcuGG-GUGUGGGGaCUGGCg -5'
10724 5' -60.2 NC_002794.1 + 42047 0.67 0.769449
Target:  5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3'
miRNA:   3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 107098 0.67 0.768553
Target:  5'- -gGCGGGggugugucgcugcGAgCCGCGCUUCUuuGACCGCg -3'
miRNA:   3'- gaCGCCU-------------CUgGGUGUGGGGA--CUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 44681 0.67 0.769449
Target:  5'- -aGCGccaucguccAGACCCAcCGCCgCCcGGCCGCg -3'
miRNA:   3'- gaCGCc--------UCUGGGU-GUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 68915 0.67 0.76044
Target:  5'- -cGCGG-GGCUCGCggcguccucgucGCCCgCgGGCCGCg -3'
miRNA:   3'- gaCGCCuCUGGGUG------------UGGG-GaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 35806 0.67 0.751328
Target:  5'- cCUGCGcccccGGACCCGguUUCCgGGCCGCc -3'
miRNA:   3'- -GACGCc----UCUGGGUguGGGGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 123484 0.67 0.76044
Target:  5'- gCUGCGGAccagcgugGACCUguGCAUCgCCgGGCUGCc -3'
miRNA:   3'- -GACGCCU--------CUGGG--UGUGG-GGaCUGGCG- -5'
10724 5' -60.2 NC_002794.1 + 100828 0.67 0.732829
Target:  5'- -gGCGGGGGCCgGCAgCCggGcuuCCGCa -3'
miRNA:   3'- gaCGCCUCUGGgUGUgGGgaCu--GGCG- -5'
10724 5' -60.2 NC_002794.1 + 26086 0.67 0.732829
Target:  5'- -cGCGGGGcagcGCCgACgGCCCCggcGAUCGCc -3'
miRNA:   3'- gaCGCCUC----UGGgUG-UGGGGa--CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.