Results 101 - 120 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10724 | 5' | -60.2 | NC_002794.1 | + | 47905 | 0.68 | 0.694944 |
Target: 5'- -cGCGGucccgcacGACCCAgGCCCC-GACCcCg -3' miRNA: 3'- gaCGCCu-------CUGGGUgUGGGGaCUGGcG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 19328 | 0.68 | 0.694944 |
Target: 5'- -cGCuGGcGACCCGCGcgccggucacCCCCUcGCCGCc -3' miRNA: 3'- gaCG-CCuCUGGGUGU----------GGGGAcUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 183617 | 0.68 | 0.693026 |
Target: 5'- -cGCGGccGGcgccCCCGCGCCCCcgacucgagcagGGCCGCc -3' miRNA: 3'- gaCGCC--UCu---GGGUGUGGGGa-----------CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 74104 | 0.68 | 0.685335 |
Target: 5'- gCUGCGGcuGCUCAC-CCUCgagcaGGCCGCc -3' miRNA: 3'- -GACGCCucUGGGUGuGGGGa----CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 107182 | 0.68 | 0.685335 |
Target: 5'- -gGCGGAG-CCgGCGCCgCC--GCCGCc -3' miRNA: 3'- gaCGCCUCuGGgUGUGG-GGacUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 52487 | 0.68 | 0.713065 |
Target: 5'- -cGCGGAcGACCUggccaucGCGCUCaucaUGGCCGUg -3' miRNA: 3'- gaCGCCU-CUGGG-------UGUGGGg---ACUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 80901 | 0.68 | 0.714013 |
Target: 5'- -gGCGGcccucgacGACCCGCGCCCgCUcGACCcCg -3' miRNA: 3'- gaCGCCu-------CUGGGUGUGGG-GA-CUGGcG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 68915 | 0.67 | 0.76044 |
Target: 5'- -cGCGG-GGCUCGCggcguccucgucGCCCgCgGGCCGCg -3' miRNA: 3'- gaCGCCuCUGGGUG------------UGGG-GaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 35806 | 0.67 | 0.751328 |
Target: 5'- cCUGCGcccccGGACCCGguUUCCgGGCCGCc -3' miRNA: 3'- -GACGCc----UCUGGGUguGGGGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 123484 | 0.67 | 0.76044 |
Target: 5'- gCUGCGGAccagcgugGACCUguGCAUCgCCgGGCUGCc -3' miRNA: 3'- -GACGCCU--------CUGGG--UGUGG-GGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 100828 | 0.67 | 0.732829 |
Target: 5'- -gGCGGGGGCCgGCAgCCggGcuuCCGCa -3' miRNA: 3'- gaCGCCUCUGGgUGUgGGgaCu--GGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 26086 | 0.67 | 0.732829 |
Target: 5'- -cGCGGGGcagcGCCgACgGCCCCggcGAUCGCc -3' miRNA: 3'- gaCGCCUC----UGGgUG-UGGGGa--CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 99550 | 0.67 | 0.732829 |
Target: 5'- -cGCGGAaACCgCGCGCgCCCU--CCGCg -3' miRNA: 3'- gaCGCCUcUGG-GUGUG-GGGAcuGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 112553 | 0.67 | 0.751328 |
Target: 5'- -aGCGG-GGCUCGCcgccgGCCaCCcGGCCGCu -3' miRNA: 3'- gaCGCCuCUGGGUG-----UGG-GGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 33147 | 0.67 | 0.732829 |
Target: 5'- gCUGCGG-GACCCGa--CCgUGuuCCGCa -3' miRNA: 3'- -GACGCCuCUGGGUgugGGgACu-GGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 103830 | 0.67 | 0.723456 |
Target: 5'- -cGUGGAGucgcagGCCUugACCaCCgagcgGGCCGCc -3' miRNA: 3'- gaCGCCUC------UGGGugUGG-GGa----CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 194559 | 0.67 | 0.723456 |
Target: 5'- -cGCGGAacagguGACCCACGCUCU---CCGCc -3' miRNA: 3'- gaCGCCU------CUGGGUGUGGGGacuGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 36165 | 0.67 | 0.721573 |
Target: 5'- -cGCcucccccccACCCGCGCCCCgGGCCGCc -3' miRNA: 3'- gaCGccuc-----UGGGUGUGGGGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 91611 | 0.67 | 0.723456 |
Target: 5'- -cGCGGccgAGGgCCACGCCgaccuCCUGcGCCGCc -3' miRNA: 3'- gaCGCC---UCUgGGUGUGG-----GGAC-UGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 41224 | 0.68 | 0.714013 |
Target: 5'- cCUcCGGGGAuuccuCCCACGCCgC-GGCCGCc -3' miRNA: 3'- -GAcGCCUCU-----GGGUGUGGgGaCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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