Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10724 | 5' | -60.2 | NC_002794.1 | + | 104449 | 0.66 | 0.778346 |
Target: 5'- -cGCGGGcGGCCCGaGCCCg-GGCgGCg -3' miRNA: 3'- gaCGCCU-CUGGGUgUGGGgaCUGgCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 115982 | 0.66 | 0.778346 |
Target: 5'- -gGaCGGGGAgCgGCGCCgCggaGACCGCg -3' miRNA: 3'- gaC-GCCUCUgGgUGUGGgGa--CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 68915 | 0.67 | 0.76044 |
Target: 5'- -cGCGG-GGCUCGCggcguccucgucGCCCgCgGGCCGCg -3' miRNA: 3'- gaCGCCuCUGGGUG------------UGGG-GaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 35806 | 0.67 | 0.751328 |
Target: 5'- cCUGCGcccccGGACCCGguUUCCgGGCCGCc -3' miRNA: 3'- -GACGCc----UCUGGGUguGGGGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 123484 | 0.67 | 0.76044 |
Target: 5'- gCUGCGGAccagcgugGACCUguGCAUCgCCgGGCUGCc -3' miRNA: 3'- -GACGCCU--------CUGGG--UGUGG-GGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 100828 | 0.67 | 0.732829 |
Target: 5'- -gGCGGGGGCCgGCAgCCggGcuuCCGCa -3' miRNA: 3'- gaCGCCUCUGGgUGUgGGgaCu--GGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 26086 | 0.67 | 0.732829 |
Target: 5'- -cGCGGGGcagcGCCgACgGCCCCggcGAUCGCc -3' miRNA: 3'- gaCGCCUC----UGGgUG-UGGGGa--CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 99550 | 0.67 | 0.732829 |
Target: 5'- -cGCGGAaACCgCGCGCgCCCU--CCGCg -3' miRNA: 3'- gaCGCCUcUGG-GUGUG-GGGAcuGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 112553 | 0.67 | 0.751328 |
Target: 5'- -aGCGG-GGCUCGCcgccgGCCaCCcGGCCGCu -3' miRNA: 3'- gaCGCCuCUGGGUG-----UGG-GGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 33147 | 0.67 | 0.732829 |
Target: 5'- gCUGCGG-GACCCGa--CCgUGuuCCGCa -3' miRNA: 3'- -GACGCCuCUGGGUgugGGgACu-GGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 44681 | 0.67 | 0.769449 |
Target: 5'- -aGCGccaucguccAGACCCAcCGCCgCCcGGCCGCg -3' miRNA: 3'- gaCGCc--------UCUGGGU-GUGG-GGaCUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 107098 | 0.67 | 0.768553 |
Target: 5'- -gGCGGGggugugucgcugcGAgCCGCGCUUCUuuGACCGCg -3' miRNA: 3'- gaCGCCU-------------CUgGGUGUGGGGA--CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 86875 | 0.66 | 0.778346 |
Target: 5'- -cGCGGcuaggcaguAGGCCCG-AUCCCggcggGGCCGCc -3' miRNA: 3'- gaCGCC---------UCUGGGUgUGGGGa----CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 100774 | 0.67 | 0.769449 |
Target: 5'- -cGCGGAGua-CACGCgCCUGcgguucgcgGCCGCu -3' miRNA: 3'- gaCGCCUCuggGUGUGgGGAC---------UGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 187902 | 0.67 | 0.769449 |
Target: 5'- -cGCGGuGccgcucGCCCGCcggGCCCCgccgcGACCGUc -3' miRNA: 3'- gaCGCCuC------UGGGUG---UGGGGa----CUGGCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 70232 | 0.67 | 0.769449 |
Target: 5'- -gGCGGGcGGCCgGcCGCCCCgcagcaGACgCGCa -3' miRNA: 3'- gaCGCCU-CUGGgU-GUGGGGa-----CUG-GCG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 73524 | 0.67 | 0.769449 |
Target: 5'- gUGCuGGAGAUCCACcaggACCCCgucCCGa -3' miRNA: 3'- gACG-CCUCUGGGUG----UGGGGacuGGCg -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 66251 | 0.67 | 0.769449 |
Target: 5'- uUGCGGcGACCCGuccgGCCCCguaGACgaGCg -3' miRNA: 3'- gACGCCuCUGGGUg---UGGGGa--CUGg-CG- -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 13729 | 0.67 | 0.769449 |
Target: 5'- gUGCGGAc-CCaCACGCUCCcGGCCGg -3' miRNA: 3'- gACGCCUcuGG-GUGUGGGGaCUGGCg -5' |
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10724 | 5' | -60.2 | NC_002794.1 | + | 42047 | 0.67 | 0.769449 |
Target: 5'- aUGCGGAGcgcguGCCagaugaugUugGCCgaCUGGCCGCg -3' miRNA: 3'- gACGCCUC-----UGG--------GugUGGg-GACUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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