miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 3' -52.6 NC_002794.1 + 141446 0.66 0.991544
Target:  5'- gGGGCGcCGGGAgcggcgCGGcGUccGGACUGGCg -3'
miRNA:   3'- -UCUGU-GCUCUa-----GCCuUA--UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 86927 0.66 0.991544
Target:  5'- cGugGCGGGcaggCGGGGcgGGAuCCGGCg -3'
miRNA:   3'- uCugUGCUCua--GCCUUa-UCU-GGCCGa -5'
10725 3' -52.6 NC_002794.1 + 108468 0.66 0.991544
Target:  5'- cGGCACGGGc-CGaGGGgcGACCGGCc -3'
miRNA:   3'- uCUGUGCUCuaGC-CUUauCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 136375 0.66 0.98759
Target:  5'- -aACAUGAGGUCGuug-AGcACCGGCUc -3'
miRNA:   3'- ucUGUGCUCUAGCcuuaUC-UGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 94865 0.66 0.98759
Target:  5'- -cGCugGAGGUgacguuuaCGGAGcGGAuCCGGCUg -3'
miRNA:   3'- ucUGugCUCUA--------GCCUUaUCU-GGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 160324 0.66 0.985488
Target:  5'- gGGGCugGAGcgCGGA-UGGGCgacgaauuugaccgCGGCg -3'
miRNA:   3'- -UCUGugCUCuaGCCUuAUCUG--------------GCCGa -5'
10725 3' -52.6 NC_002794.1 + 102465 0.67 0.984249
Target:  5'- gAGAUGCGGcgcGUCGGcGUGccGGCCGGCUu -3'
miRNA:   3'- -UCUGUGCUc--UAGCCuUAU--CUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 41136 0.67 0.984249
Target:  5'- gGGuguCGCGGGuUCGcGA--AGACCGGCa -3'
miRNA:   3'- -UCu--GUGCUCuAGC-CUuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 110501 0.67 0.980265
Target:  5'- cGGCGCcugGAGAaagUCGGucgAGAUCGGCg -3'
miRNA:   3'- uCUGUG---CUCU---AGCCuuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 105206 0.67 0.980265
Target:  5'- cGGACGCGGuGAUCaGggUcgacaGGGCCGuGCg -3'
miRNA:   3'- -UCUGUGCU-CUAGcCuuA-----UCUGGC-CGa -5'
10725 3' -52.6 NC_002794.1 + 113506 0.67 0.980265
Target:  5'- cGGC-CGAGAgccgCGGAGggAGcuccGCCGGCUc -3'
miRNA:   3'- uCUGuGCUCUa---GCCUUa-UC----UGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 121589 0.67 0.978935
Target:  5'- cGGGCGCGGGGUCGuucggcgacgauuucGAAgucauCCGGCUg -3'
miRNA:   3'- -UCUGUGCUCUAGC---------------CUUaucu-GGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 72206 0.67 0.978012
Target:  5'- cAGGCgcaGCGGGcgcuGUCGGAAgaacacgauGGCCGGCa -3'
miRNA:   3'- -UCUG---UGCUC----UAGCCUUau-------CUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 145905 0.68 0.973217
Target:  5'- cGACGgGGGAgucgaccgcgccgagCGGAG-GGGCCGGCg -3'
miRNA:   3'- uCUGUgCUCUa--------------GCCUUaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 146978 0.68 0.972945
Target:  5'- uGuCGCGAGGUCGGcgcc-GCCGGCc -3'
miRNA:   3'- uCuGUGCUCUAGCCuuaucUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 36986 0.68 0.972945
Target:  5'- -cGCGCGcAGGUCGGcgaggcggacccGGUAGAgCGGCUc -3'
miRNA:   3'- ucUGUGC-UCUAGCC------------UUAUCUgGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 111071 0.68 0.972118
Target:  5'- cAGACGCGcucccccgucggcaGGGUCGGcg-GGcCCGGCg -3'
miRNA:   3'- -UCUGUGC--------------UCUAGCCuuaUCuGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 178275 0.68 0.970117
Target:  5'- cGGAgACGGGGUCGGucgAGcgaCGGCUc -3'
miRNA:   3'- -UCUgUGCUCUAGCCuuaUCug-GCCGA- -5'
10725 3' -52.6 NC_002794.1 + 115898 0.68 0.970117
Target:  5'- cGGAgCGCGGGGgguucgUGGggUGGACuUGGCg -3'
miRNA:   3'- -UCU-GUGCUCUa-----GCCuuAUCUG-GCCGa -5'
10725 3' -52.6 NC_002794.1 + 133013 0.68 0.970117
Target:  5'- cGAuUACGAcGUCGGcGAUAGAcCCGGCa -3'
miRNA:   3'- uCU-GUGCUcUAGCC-UUAUCU-GGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.